CX288042

Overview
NameCX288042
Unique NameCX288042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12673 contig Ccv1_Contig12673:15..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: HY6H_HYONI (Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H6H PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.555e-15
Identity = 51/148 (34.46%), Postives = 76/148 (51.35%), Query Frame = 2
Query:   50 NLPESYVRPESERPNLSEVSECENVPVIDLACDDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMRL----STSFNVNKEKVHN-----WRDYLRLHCYPLDK-YVPEWPSNPSTFKTI 463
            ++ ES++ P  +R    +V    +VP+IDL      L+VQQ+  AC+++G FQVINH  P E +   +EV KEFF  P EEK K      +    L         V  E++ N     W+D L   C+PLD+  V  WP  P+ ++ +
Sbjct:   12 SVSESFIAPLQKRAE-KDVPVGNDVPIIDLQ-QHHHLLVQQITKACQDFGLFQVINHGFPEELMLETMEVCKEFFALPAEEKEKFKPKGEAAKFELPLEQKAKLYVEGEQLSNEEFLYWKDTLAHGCHPLDQDLVNSWPEKPAKYREV 157          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: FL3H_PETCR (Flavanone 3-dioxygenase OS=Petroselinum crispum GN=FHT PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.910e-15
Identity = 43/147 (29.25%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   53 LPESYVRPESERPNLSEVSECENVPVIDLA------CDDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMRLSTSFNVNKEKVHNWRDYLRLHCYPLD-KYVPEWPSNPSTFKTINDM 472
            L   +VR E ERP ++     + +PVI LA       D RS I +++  AC+++G FQV++H + ++ +  +  + ++FF  P EEKL+       K   + +S ++  E V +WR+ +    YP+  +    WP  P  +++I +M
Sbjct:   15 LNSKFVRDEDERPKIAYNKFSDEIPVISLAGIDDDSVDKRSQICRKIVEACEDWGIFQVVDHGIDIDLISEMTRLARQFFALPAEEKLRFDMTGGKKGGFIVSS-HLQGEAVQDWREIVTYFSYPIQARDYSRWPDKPEGWRSITEM 160          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 46/158 (29.11%), Postives = 82/158 (51.90%), Query Frame = 2
Query:   23 VLSSGIRYTNLPESYVRPESERPNLSEVSECENVPVIDLACDDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMRLSTSFNVNKEKVHNWRDYLRLHC-YPLDKYVPEWPSNPSTFKTINDMMYSYLPD 493
            +L +   + +LPES+V    + P  ++     ++P+IDL+C  R  + + +  A K  GFFQV+NH +  + +  +  + ++FF+ P  +K  L+S++  K  RL +    +      WRD LRL C +P+D  + EWP  P   + + +   S   D
Sbjct:    4 ILHATPAHVSLPESFVFASDKVPPATKA--VVSLPIIDLSCG-RDEVRRSILEAGKELGFFQVVNHGVSKQVMRDMEGMCEQFFHLPAADKASLYSEERHKPNRLFSGATYDTGGEKYWRDCLRLACPFPVDDSINEWPDTPKGLRDVIEKFTSQTRD 158          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: FLS_EUSGR (Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma grandiflorum GN=FLS PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.720e-14
Identity = 48/142 (33.80%), Postives = 73/142 (51.41%), Query Frame = 2
Query:   53 LPESYVRPESERPNLSEVSECE-NVPVIDLACDDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMR-LSTSFNVNKEKVHNWRDYLRLHCYPLDKYVPE-WPSNPSTFKTIND 469
            +P  Y+R E+E+P +S V      VPVIDL+  D   IV  V+ A K +G FQV+NH +P E + ++ EV K FF  P EEK  +   + S+++    T      +    W D+L    +P      + WP NP  ++  N+
Sbjct:   19 IPAEYIRSENEQPVISTVHGVVLEVPVIDLSDSDEKKIVGLVSEASKEWGIFQVVNHGIPNEVIRKLQEVGKHFFELPQEEKELIAKPEGSQSIEGYGTRLQKEVDGKKGWVDHLFHKIWPPSAINYQFWPKNPPAYREANE 160          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 47/151 (31.13%), Postives = 75/151 (49.67%), Query Frame = 2
Query:   53 LPESYVRPESERPNLSEVSECE-NVPVIDLAC--DDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDP--SKTMRLSTSFNVNKEKVHNWRDYLRLHCYPLDKY-VPEWPSNPSTFKTINDMMYSYL 487
            +P  Y+R E+E+P  + +      VPVID++   DD   +V+++  A K +G FQVINH +P E +E + +V KEFF    +E+ +L +  P         TS     E    W D+L    +P        WP NP +++  N+    +L
Sbjct:   33 IPSEYIRSENEQPAATTLQGVVLEVPVIDISNVDDDEEKLVKEIVEASKEWGIFQVINHGIPDEVIENLQKVGKEFFEEVPQEEKELIAKKPGAQSLEGYGTSLQKEIEGKKGWVDHLFHKIWPPSAINYRYWPKNPPSYREANEEYAKWL 183          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.436e-13
Identity = 42/152 (27.63%), Postives = 76/152 (50.00%), Query Frame = 2
Query:   26 LSSGIRYTNLPESYVRPESERPNLSEVSECENVPVIDLACDD-----RSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMRLSTSFNVNKEKVHNWRDYLRLHCYPL-DKYVPEWPSNPSTFKTI 463
            L+S      L + +VR E ERP ++       +P+I LA  D     R  I +++  AC+++G FQ+++H +  E +  +  + +EFF  P EEKL+       K   + +S ++  E V +WR+ +    YP+  +    WP  P  ++ +
Sbjct:    7 LTSIAHEKTLQQKFVRDEDERPKVAYNDFSNEIPIISLAGIDEVEGRRGEICKKIVAACEDWGIFQIVDHGVDAELISEMTGLAREFFALPSEEKLRFDMSGGKKGGFIVSS-HLQGEAVQDWREIVTYFSYPIRHRDYSRWPDKPEAWREV 157          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: FLS_PETHY (Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 46/143 (32.17%), Postives = 72/143 (50.35%), Query Frame = 2
Query:   53 LPESYVRPESERPNLSEVSECE-NVPVIDLACDDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKT--MRLSTSFNVNKEKVHNWRDYLRLHCYPLDKY-VPEWPSNPSTFKTIND 469
            +P  Y+R E+E+P  + +      VPVIDL   D + +V+ +A A K +G FQ+INH +P EA+  + +V KEFF    +E+ +L +  P         TS     E    W D+L    +P        WP NP +++  N+
Sbjct:   31 IPSEYIRSENEQPAATTLHGVVLQVPVIDLRDPDENKMVKLIADASKEWGIFQLINHGIPDEAIADLQKVGKEFFEHVPQEEKELIAKTPGSNDIEGYGTSLQKEVEGKKGWVDHLFHKIWPPSAVNYRYWPKNPPSYREANE 173          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 42/147 (28.57%), Postives = 74/147 (50.34%), Query Frame = 2
Query:   47 TNLPESYVRPESERPNLSEVSECENVPVIDLACDD-----RSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMRLSTSFNVNKEKVHNWRDYLRLHCYPL-DKYVPEWPSNPSTFKTIND 469
            + L   +VR E ERP ++     + +PVI LA  D     R  I +++  AC+N+G FQV++H +    V  +  + ++FF  P EEKL+       K   + +S ++  E V +WR+ +    YP+ ++    WP  P  +  + +
Sbjct:   12 SKLNSKFVRDEDERPKVAYNEFSDEIPVISLAGIDDVDGKRGEICREIVEACENWGIFQVVDHGVDTSLVADMTRLARDFFALPPEEKLRFDMSGGKKGGFIVSS-HLQGEAVQDWREIVTYFSYPVRNRDYSRWPDKPQGWAKVTE 157          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 42/152 (27.63%), Postives = 74/152 (48.68%), Query Frame = 2
Query:   23 VLSSGIRYTNLPESYVRPESERPNLSEV-SECENVPVIDLACDDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMR-LSTSFNVNKEKVHNWRDYLRLHCYPLD-KYVPEWPSNPSTFKTIND 469
            + SS +    +P  ++R E E+P ++        +PV+DL+  D   + + V  A + +G FQV+NH +P E + R+ +V ++FF  P  EK  +   + SK +    T    + E    W D+L    +P        WP NP  ++ +N+
Sbjct:    9 ISSSSLLTEAIPLEFIRSEKEQPAITTFRGPTPAIPVVDLSDPDEESVRRAVVKASEEWGLFQVVNHGIPTELIRRLQDVGRKFFELPSSEKESVAKPEDSKDIEGYGTKLQKDPEGKKAWVDHLFHRIWPPSCVNYRFWPKNPPEYREVNE 160          
BLAST of CX288042 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 45/151 (29.80%), Postives = 79/151 (52.32%), Query Frame = 2
Query:   32 SGIRYTNLPESYVRPESERPNLSEVSECENVPVIDL--------ACDDRSLIVQQVAYACKNYGFFQVINHKLPLEAVERVLEVVKEFFNRPVEEKLKLHSDDPSKTMRLSTSFNVNKEKVHNWRDYLRLHCYPL-DKYVPEWPSNPSTFK 457
            +G    NLP  YVRPE E  ++  +     +PVIDL        ACD+    + +   AC ++GFFQ+INH +  E +E++    ++FF  P +EK   +   P+       +F  ++E+  +W D   L   P+ ++ +  WP++P++F+
Sbjct:   21 AGKELKNLPNRYVRPELEHDDVVPIDNSLEIPVIDLSRLLDQQYACDE----LAKFHSACLDWGFFQLINHGVREEVIEKMKVDTEDFFRLPFKEK-NAYRQLPNGMEGYGQAFVTSEEQKLDWADMHFLITKPVQERNMRFWPTSPTSFR 166          
The following BLAST results are available for this feature:
BLAST of CX288042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HY6H_HYONI1.555e-1534.46Hyoscyamine 6-dioxygenase OS=Hyoscyamus niger GN=H... [more]
FL3H_PETCR5.910e-1529.25Flavanone 3-dioxygenase OS=Petroselinum crispum GN... [more]
IDS3_HORVU1.720e-1429.112'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
FLS_EUSGR1.720e-1433.80Flavonol synthase/flavanone 3-hydroxylase OS=Eusto... [more]
FLS_SOLTU9.436e-1331.13Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
FL3H_MALDO9.436e-1327.63Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
FLS_PETHY1.609e-1232.17Flavonol synthase/flavanone 3-hydroxylase OS=Petun... [more]
FL3H_MATIN2.102e-1228.57Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FLS1_ARATH2.745e-1227.63Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
NCS1_COPJA3.586e-1229.80S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]

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Properties
Property NameValue
Genbank descriptionC01016B08SK Veg1 Citrus clementina cDNA clone C01016B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288042 ID=CX288042; Name=CX288042; organism=Citrus clementina; type=EST; length=722bp
GAATTCGGCACGAGGTACCAAAGTTCTGTCCTCGGGAATCCGGTACACTA
ACTTGCCGGAGAGCTACGTAAGGCCAGAATCGGAGAGACCAAATCTGTCT
GAAGTTTCTGAATGCGAAAACGTTCCTGTTATTGATTTGGCTTGTGATGA
TAGAAGCTTAATTGTGCAACAAGTTGCTTATGCTTGCAAGAATTATGGAT
TTTTCCAGGTGATAAATCACAAATTGCCTTTAGAAGCAGTGGAAAGAGTC
TTAGAAGTGGTGAAAGAGTTTTTTAACCGGCCAGTTGAGGAGAAGCTGAA
GCTCCACTCAGATGATCCATCAAAGACAATGAGATTGTCAACGAGTTTTA
ATGTCAACAAGGAGAAAGTTCACAATTGGAGAGATTACCTCAGACTTCAC
TGCTATCCTCTTGATAAGTATGTACCTGAGTGGCCTTCAAATCCATCCAC
CTTCAAGACCATCAACGACATGATGTATTCCTATTTGCCAGATCACACGC
TGGATATCTCAGAATCAGAATTTATGTGCAATTTCGTTCATAAAGTTGTG
CAGCGGTGGGGTTCTTTACCTATACGAGGTTTCAACCAAGAGACAATCAC
TTCAAAACTCANAACCGATTCTCCACAGGTTCTTTATGGTTTGGCAAGTA
AGTTGATCAAGAAACCTAAGAAATTGGAATTACTTCTGGATAAATATGGG
CTAGGTGTTCGATCAACTGCCT
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