CX288044

Overview
NameCX288044
Unique NameCX288044
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14399 contig Ccv1_Contig14399:35..759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 395.586 bits (1015), Expect = 1.427e-109
Identity = 192/223 (86.10%), Postives = 203/223 (91.03%), Query Frame = 2
Query:   35 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQH 694
            MATVTT ASA++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAKKGEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EA EKELANGRLAMLAFLGF+VQH
Sbjct:    1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAMLAFLGFVVQH 223          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 2.691e-108
Identity = 194/222 (87.39%), Postives = 201/222 (90.54%), Query Frame = 2
Query:   35 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQH 694
            MATVTTQASAA+F PC  KSRFL GSSGKLNR VA +PV  S SASFKVEAKKGEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNPGSVNQDPIFKQYSLP  EVGYPGGIFNPLNFAPT EA EKE+ANGRLAMLAFLGFI+QH
Sbjct:    1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIFKQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLAFLGFIIQH 222          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 257.684 bits (657), Expect = 4.644e-68
Identity = 133/209 (63.64%), Postives = 152/209 (72.73%), Query Frame = 2
Query:   71 FRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDA-GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNFAPTDEAXEKELANGRLAMLAFLGFIVQH 694
            FR     S   +GS     R+VA++             KG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W    GK  YFASSST   +  +   YVEIRRWQDIKNPGSVNQDPIFK YSLPP+E GYPG +FNPLNFAP  E  EKELANGRLAMLAFLGF+VQH
Sbjct:    7 FRTRVPPSPAASGSPRSTRRDVAVQA------------KGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAMLAFLGFLVQH 201          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.094e-52
Identity = 107/215 (49.77%), Postives = 138/215 (64.19%), Query Frame = 2
Query:   83 ASKSRFLTGSSGKLNREVALKPVSSSA----SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAXEKELANGRLAMLAFLGFIVQHM 697
            A+K+ FL G   ++++ +A  PV S +    +   +  +  W PG   P +L+GSLPGD GFDPLGL  DPE+LKW  QAELV+SRWAMLG  G+ +PE  TKIG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E   KE+ NGRLAMLA +G   QH+
Sbjct:   29 ATKASFLGGKRLRVSKFIA--PVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 241          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.158e-51
Identity = 103/212 (48.58%), Postives = 134/212 (63.21%), Query Frame = 2
Query:   86 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGE--WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGI-FNPLNF-----APTDEAXEKELANGRLAMLAFLGFIVQHM 697
            +K+ FL G   ++++        S+ +  V A      W PG   P +L+GSLPGD GFDPLGLA DPE+L+W  QAELV+ RWAMLG  G+ +PE+ TKIGI+N P WY AG+ EYF  ++TLF++E +L  + E RRW DI  PG VN DPIF    L   +VGYPGG+ F+PL +     A   E   KE+ NGRLAMLA +G   QH+
Sbjct:   30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHI 241          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.254e-29
Identity = 91/247 (36.84%), Postives = 129/247 (52.23%), Query Frame = 2
Query:   38 ATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            ++++T A AA     +  S+ +T  +  + R  +  PV   A+ ++      W     S +YL+G LPGD GFDPLGL+ DPE        KW    E++N R+AMLG  G + PE+  K G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L          +  YPGG +FNPL F   +++ +    KE+ NGRLAMLA LG+ +Q
Sbjct:   10 SSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQL------WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGLGGSGDPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQ 242          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.236e-28
Identity = 95/253 (37.55%), Postives = 123/253 (48.62%), Query Frame = 2
Query:   20 LSSGNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSL-------PPNEVGYPGG-IFNPLNFAPTDEAXE----KELANGRLAMLAFLGFIVQ 691
            L S +  T   +A    FR  +  S       G L R  A  PV           +  W     S +YL+GSLPGD GFDPLGL+ DPE        +W    E++N R+AMLG VG + PE   K+G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   PGS+      KQY L             YPGG  FNPL F   +++ +    KE+ NGRLAMLA LG+ +Q
Sbjct:    6 LVSSSSLTFAAEAVRQSFRARSLPSSVGCSRKG-LVRAAATPPVKQGG-----VDRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMG-----KQYFLGLEKGFGGSGNPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQ 244          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.850e-25
Identity = 71/179 (39.66%), Postives = 98/179 (54.75%), Query Frame = 2
Query:  191 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAXEKELANGRLAMLAFLGFIVQ 691
            EW PG   P +L+GS PGD GFDPLGLA  PEN + + ++E+ + RWAML V G+L+PE       +   +W     G+A Y      + +  T+  IEF+   + E +R        ++ +DP  K+         YPGG F+PL F    A  +E   KE+ NGRLAMLAF+GF VQ
Sbjct:   47 EWFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQR--------TMEKDPEKKK---------YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQ 208          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.723e-25
Identity = 69/179 (38.55%), Postives = 99/179 (55.31%), Query Frame = 2
Query:  191 EWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQW--YDAGKAEY------FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPPNEVGYPGGIFNPLNF----APTDEAXEKELANGRLAMLAFLGFIVQ 691
            +W+PG   P+YL+GS PGD GFD LGL E P NL+ Y ++EL++ RWAML V G+++PE       +   +W     G+A Y      + +  T+  IEF+   +VE +R        S+ +D   K+         YPGG F+PL +    A  +E   KE+ NGRLA+LA +GF VQ
Sbjct:   48 DWMPGQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWVKAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQR--------SMEKDSEKKK---------YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQ 209          
BLAST of CX288044 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.169e-24
Identity = 74/197 (37.56%), Postives = 104/197 (52.79%), Query Frame = 2
Query:  179 AKKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFA---------PTDEAXEK----ELANGRLAMLAFLGF 682
            A K  W+P +        P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAML V+G+ + + +T I       W++AG    A    S  TL   + +L  +VE +RW D  +P S + +         + +S    E GYPGG  F+PL+ A         P  +  E+    E+ + RLAMLA L F
Sbjct:   55 APKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIF 245          
The following BLAST results are available for this feature:
BLAST of CX288044 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
CB24_ARATH1.427e-10986.10Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA2.691e-10887.39Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU4.644e-6863.64Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_PETHY2.094e-5249.77Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC5.158e-5148.58Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB13_SOLLC3.254e-2936.84Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.236e-2837.55Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU2.850e-2539.66Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC3.723e-2538.55Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB4_SPIOL9.169e-2437.56Chlorophyll a-b binding protein CP24, chloroplasti... [more]

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Properties
Property NameValue
Genbank descriptionC01016B10SK Veg1 Citrus clementina cDNA clone C01016B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288044 ID=CX288044; Name=CX288044; organism=Citrus clementina; type=EST; length=725bp
TGCACTACGAGGCTCATAACTCTCGTCGGGAAACATGGCAACCGTCACAA
CACAAGCCTCGGCCGCCGTGTTCCGGCCATGCGCATCCAAATCCAGGTTC
CTTACTGGGTCTTCGGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGT
GAGCTCAAGCGCTTCTTTCAAAGTTGAAGCCAAGAAGGGGGAGTGGTTAC
CGGGCTTGGCCTCACCAACTTACCTCAACGGCAGCCTCCCCGGTGACAAT
GGATTTGACCCCTTGGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTA
TGTGCAAGCCGAGCTTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTG
GAATGTTGTTGCCCGAAGTTTTCACAAAGATTGGAATTATTAATGTTCCT
CAATGGTATGATGCTGGGAAGGCTGAGTACTTTGCATCATCATCGACCCT
TTTCGTGATCGAGTTCATCTTGTTCCACTATGTGGAGATAAGAAGATGGC
AAGACATAAAGAACCCAGGAAGTGTCAACCAAGACCCCATTTTCAAGCAG
TACAGCTTGCCTCCAAACGAAGTTGGGTACCCCGGTGGCATCTTCAACCC
ACTCAACTTTGCACCCACTGATGAGGCANAGGAGAAGGAGCTTGCCAATG
GGAGATTGGCAATGTTGGCATTCTTGGGATTTATTGTTCAGCACATGTGA
CAGGCAAGGGCCATTTGAAACCTCT
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