CX288052

Overview
NameCX288052
Unique NameCX288052
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length680
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig137 contig Ccv1_Contig137:156..835. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_XENTR (Transcription factor BTF3 homolog 4 OS=Xenopus tropicalis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV
Sbjct:   28 VHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV 146
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_XENLA (Transcription factor BTF3 homolog 4 OS=Xenopus laevis GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.542e-30
Identity = 65/119 (54.62%), Postives = 91/119 (76.47%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K++ ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   E++DD+VPELV
Sbjct:   28 VHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEVKQITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKASKPEDIEEEDDDVPELV 146
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_BOVIN (Transcription factor BTF3 homolog 4 OS=Bos taurus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.704e-29
Identity = 63/119 (52.94%), Postives = 91/119 (76.47%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++ T  P   ++++D+VP+LV
Sbjct:   28 VHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKTPKPEDIDEEEDDVPDLV 146
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_PONAB (Transcription factor BTF3 homolog 4 OS=Pongo abelii GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   28 VHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_MOUSE (Transcription factor BTF3 homolog 4 OS=Mus musculus GN=Btf3l4 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   28 VHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_HUMAN (Transcription factor BTF3 homolog 4 OS=Homo sapiens GN=BTF3L4 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.226e-29
Identity = 63/119 (52.94%), Postives = 90/119 (75.63%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++    P   +++DD+VP+LV
Sbjct:   28 VHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKPEDIDEEDDDVPDLV 146
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BTF3_MOUSE (Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=2 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 3.797e-29
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQ +LK++GVN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ + G     T EDDDDEVP+LV
Sbjct:   75 VHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD-GKAPLATGEDDDDEVPDLV 192
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BTF3_HUMAN (Transcription factor BTF3 OS=Homo sapiens GN=BTF3 PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.797e-29
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQ +LK++GVN I  IEEVN+F +   VI F NPKVQAS+AANT+ ++G  +TK+L ++LP I+NQLG D+L +LR+LAE   KQ+ + G     T EDDDDEVP+LV
Sbjct:   77 VHRTATADDKKLQFSLKKLGVNNISGIEEVNMFTNQGTVIHFNNPKVQASLAANTFTITGHAETKQLTEMLPSILNQLGADSLTSLRRLAEALPKQSVD-GKAPLATGEDDDDEVPDLV 194
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_DANRE (Transcription factor BTF3 homolog 4 OS=Danio rerio GN=btf3l4 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 8.458e-29
Identity = 64/119 (53.78%), Postives = 90/119 (75.63%), Query Frame = -1 
Query:  324 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPELV 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  +TK+L ++LPGI++QLG D+L +LRKLAEQF +Q  +         +++DD+VP+LV
Sbjct:   28 VHRTATADDKKLQSSLKKLVVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAETKQLTEMLPGILSQLGADSLTSLRKLAEQFPRQVLDNKAPKAEDIDEEDDDVPDLV 146
[Close]
BLAST of CX288052 vs. ExPASy Swiss-Prot
Match: BT3L4_CHICK (Transcription factor BTF3 homolog 4 OS=Gallus gallus GN=BTF3L4 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.483e-28
Identity = 61/118 (51.69%), Postives = 88/118 (74.58%), Query Frame = -1 
Query:  327 VHKTTTTDDKRLQSTLKRIGVNAIPAIEEVNIFKDD-VVIQFLNPKVQASIAANTWVVSGAPQTKKLQDILPGIINQLGPDNLDNLRKLAEQFQKQAPNAGTGAPTTQEDDDDEVPEL 677
            VH+T T DDK+LQS+LK++ VN I  IEEVN+ KDD  VI F NPKVQAS++ANT+ ++G  + K + ++LPGI++QLG D+L +LRKLAEQF +Q  ++        +++DD+VP+L
Sbjct:   28 VHRTATADDKKLQSSLKKLAVNNIAGIEEVNMIKDDGTVIHFNNPKVQASLSANTFAITGHAEAKPITEMLPGILSQLGADSLTSLRKLAEQFPRQVLDSKAPKSEDIDEEDDDVPDL 145
The following BLAST results are available for this feature:
BLAST of CX288052 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
BT3L4_XENTR1.542e-3054.62Transcription factor BTF3 homolog 4 OS=Xenopus tro... [more]
BT3L4_XENLA1.542e-3054.62Transcription factor BTF3 homolog 4 OS=Xenopus lae... [more]
BT3L4_BOVIN1.704e-2952.94Transcription factor BTF3 homolog 4 OS=Bos taurus ... [more]
BT3L4_PONAB2.226e-2952.94Transcription factor BTF3 homolog 4 OS=Pongo abeli... [more]
BT3L4_MOUSE2.226e-2952.94Transcription factor BTF3 homolog 4 OS=Mus musculu... [more]
BT3L4_HUMAN2.226e-2952.94Transcription factor BTF3 homolog 4 OS=Homo sapien... [more]
BTF3_MOUSE3.797e-2956.30Transcription factor BTF3 OS=Mus musculus GN=Btf3 ... [more]
BTF3_HUMAN3.797e-2956.30Transcription factor BTF3 OS=Homo sapiens GN=BTF3 ... [more]
BT3L4_DANRE8.458e-2953.78Transcription factor BTF3 homolog 4 OS=Danio rerio... [more]
BT3L4_CHICK5.483e-2851.69Transcription factor BTF3 homolog 4 OS=Gallus gall... [more]

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Properties
Property NameValue
Genbank descriptionC01016C06SK Veg1 Citrus clementina cDNA clone C01016C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288052 ID=CX288052; Name=CX288052; organism=Citrus clementina; type=EST; length=680bp
AATTCGGCACGAGGGTCTCGAGTTTTTTTTTTTTTTTTTTTTTTTGAAAG
CCATTGCAACAGTGCCTCCGGATTCTGAAAGAGTAAAAGGGTTTTCACTG
GTTTCACTGGAGCAAAACATTGAATTAAAAAGTAACAATATCTAGTGTCA
CAGGGAGAATCAGATAAAACAAGAGAAAGTTGACTCGGAAAAGTAAAATA
AAAACTCAAAAAACATAGAAAATATATAGAATAACACAAAGTCCCTCTAG
ATAAAACTCTCTAAGAAGCAGCGTCAGGTTTCTCTGTTTTCTCCTCTGCG
GCAGCTTCAAACGTCTCGCCTGCCACAAGCTCTGGGACCTCATCGTCGTC
GTCCTCTTGAGTCGTGGGTGCACCAGTTCCTGCATTAGGTGCTTGCTTCT
GAAACTGCTCCGCCAACTTCCTCAGGTTGTCCAAATTATCTGGCCCCAAT
TGATTGATAATTCCAGGGAGAATATCCTGCAACTTCTTGGTTTGTGGGGC
ACCACTAACTACCCATGTGTTGGCAGCAATTGAAGCTTGTACTTTGGGAT
TTAAGAACTGAATAACGACGTCATCCTTGAAAATGTTAACTTCCTCAATT
GCAGGAATAGCATTCACTCCTATTCTCTTCAAGGTGCTCTGAAGCCTCTT
GTCATCGGTGGTTGTTGTCTTATGAACAGC
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