CX288064

Overview
NameCX288064
Unique NameCX288064
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: R13L4_ARATH (Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2)

HSP 1 Score: 275.404 bits (703), Expect = 1.435e-73
Identity = 128/204 (62.75%), Postives = 163/204 (79.90%), Query Frame = 2
Query:   47 AWWRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAEN---DDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVDKAY 649
            +WW +IY+GLP+G+G S+I+TTR+  V++++  +  + H P+ LS D+SWLLF  +AFAA +G C+ P LE VGKEIV KCKGLPL IKAVGG++L K   Y+EWRR A++F+DEL  N    D+VM+SLQLSYDELP +LKSC L+ S+YPEDCVI K+QLV+ WIGEGFV  RNGRS+ E+GEDCFSGLTNRCL+EVVDK Y
Sbjct:  275 SWWDKIYQGLPRGQGGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAFAANDGTCERPELEDVGKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLSYDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLTNRCLIEVVDKTY 478          

HSP 2 Score: 22.7126 bits (47), Expect = 1.435e-73
Identity = 9/10 (90.00%), Postives = 10/10 (100.00%), Query Frame = 3
Query:  669 QIHDMVRDLV 698
            +IHDMVRDLV
Sbjct:  486 KIHDMVRDLV 495          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: DRL9_ARATH (Probable disease resistance protein At1g58602 OS=Arabidopsis thaliana GN=At1g58602 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 73/205 (35.61%), Postives = 107/205 (52.20%), Query Frame = 2
Query:   53 WRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFA---ATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELA--------ENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQR--NGRSSIEAGEDCFSGLTNRCLV 628
            W  I    P  KG  +++T+RN  +      K      P+ L  DDSW LF++IAF    A+E E     +E +G++++E C GLPLAIK +GGM+  K  T ++WRR ++N    L         +N++S    L LS++ELP YLK CFL  + +PED  I+ E L Y+W  E     R  +G    + G+     L  R +V
Sbjct:  285 WEVIKPIFPPTKGWKLLLTSRNESIVAPTNTKYFNFK-PECLKTDDSWKLFQRIAFPINDASEFEIDE-EMEKLGEKMIEHCGGLPLAIKVLGGMLAEKY-TSHDWRRLSENIGSHLVGGRTNFNDDNNNSCNYVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEEIFQPRHYDGEIIRDVGDVYIEELVRRNMV 486          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 68/194 (35.05%), Postives = 109/194 (56.19%), Query Frame = 2
Query:   89 GSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFA-ATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVD----KAYIK 655
            G+SI+ITTR  K+   MG    +++    LS++D WLLF++ AF   TE     P L  +GKEIV+KC G+PLA K +GG++ +K    +EW    D+    L ++++SV+ +L+LSY  LP  L+ CF   +V+P+D  I KE L+  W+   F+  +      + G + ++ L  R   + ++    K Y K
Sbjct:  284 GASILITTRLEKIGSIMGT--LQLYQLSNLSQEDCWLLFKQRAFCHQTETS---PKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREE-SEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYFK 471          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: DRL7_ARATH (Probable disease resistance protein At1g58390 OS=Arabidopsis thaliana GN=At1g58390 PE=2 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 67/202 (33.17%), Postives = 110/202 (54.46%), Query Frame = 2
Query:   53 WRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFA---ATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDEL----AENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGF---VPQRNGRSSIEAGEDCFSGLTNRCLV 628
            W  I    P  KG  +++T++N  V+ +  +K      P+ L+ +DSW LF++IAF    A+E +     +E +GK++++ C GLPLAIK +GG++  K  T ++W R + N   ++    + N+ S+   L +S++ELP YLK CFL  + +PED  I  E+L Y W  EG        NG +  + G+     L  R ++
Sbjct:  281 WDLIKPIFPPNKGWKVLLTSQNESVAVRGDIKYLNFK-PECLAIEDSWTLFQRIAFPKKDASESKVDE-EMEDMGKQMLKHCGGLPLAIKVLGGLLAAKY-TMHDWERLSVNIGSDIVGRTSSNNSSIYHVLSMSFEELPSYLKHCFLYLAHFPEDHKINVEKLSYCWAAEGISTAEDYHNGETIQDVGQSYLEELVRRNMI 479          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: DRL4_ARATH (Putative disease resistance protein At1g50180 OS=Arabidopsis thaliana GN=At1g50180 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.873e-24
Identity = 73/207 (35.27%), Postives = 110/207 (53.14%), Query Frame = 2
Query:   53 WRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEG--ECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDDS-------VMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFV-PQRN---GRSSIEAGEDCFSGLTNRCLVEV 634
            W  +    P   GS II+TTRN +V+     +   +H P+ L+ ++SW L  KI+ +  E         +E +GK+IV +C GLPLAI  +GG++  K  T+NEW+R  +N +  ++    S       V   L LSY+ LPP++K CFL F+ YPED  +    LV + I EG V P ++   G +  + G+D    L  R +V V
Sbjct:  283 WDCLKHVFPHETGSEIILTTRNKEVALYADPRGV-LHEPQLLTCEESWELLEKISLSGRENIEPMLVKKMEEIGKQIVVRCGGLPLAITVLGGLLATKS-TWNEWQRVCENIKSYVSNGGSSNGSKNMLVADVLCLSYEYLPPHVKQCFLYFAHYPEDYEVHVGTLVSYCIAEGMVMPVKHTEAGTTVEDVGQDYLEELVKRSMVMV 487          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: RPM1_ARATH (Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.472e-23
Identity = 65/202 (32.18%), Postives = 114/202 (56.44%), Query Frame = 2
Query:   41 TRAWWRRIYEGLPKG-KGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDD--SVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVV 637
            T   WR I   LP G  GS +++TTR+  V+       +  H  + L ED++W+LF   AF A+  +C+  +LE + +++VE+C+GLPLAI ++G MM  K    +EW++       EL  N +   V + + LS+++LP  LK CFL  S++P +  +++++L+  W+ + FV    G  + E  +   + L  R +++V+
Sbjct:  290 TTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTK-KFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVI 490          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 63/190 (33.16%), Postives = 107/190 (56.32%), Query Frame = 2
Query:   86 KGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQ-RNGRSSIEAGEDCFSGLTNRCLVEVVDKAYI 652
            +GS I++TTR+ +V+  M      +H  + LS+ D W LF K  F   E  C +  +  + + IV KC+GLPLA+K +GG++ ++     EW R   +   +L  +  +++  L++SY  LP +LK CF   S++P+     K+++V  W+ EGF+ Q R+ ++  E G + FS L +R L++     YI
Sbjct:  306 QGSQILVTTRSQRVASIMCA--VHVHNLQPLSDGDCWSLFMKTVFGNQE-PCLNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVI-EWERVLSSRIWDLPADKSNLLPVLRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYFSELESRSLLQKTKTRYI 491          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: DRL10_ARATH (Probable disease resistance protein RDL5/RF45 OS=Arabidopsis thaliana GN=RDL5 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.510e-23
Identity = 69/205 (33.66%), Postives = 107/205 (52.20%), Query Frame = 2
Query:   53 WRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFA---ATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELA--------ENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQR--NGRSSIEAGEDCFSGLTNRCLV 628
            W  I    P  KG  +++T+RN  V+ +          P+ L+ +DSW LF++IA     A E +      E +GK +++ C GLPLAI+ +GGM+  K  T ++WRR ++N    L         +N+++    L LS++ELP YLK CFL  + +PED  I+ E L Y+W  EG    R  +G +  + G+     L  R +V
Sbjct:  281 WELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFK-PECLTTEDSWTLFQRIALPMKDAAEFKIDEEK-EELGKLMIKHCGGLPLAIRVLGGMLAEKY-TSHDWRRLSENIGSHLVGGRTNFNDDNNNTCNNVLSLSFEELPSYLKHCFLYLAHFPEDYEIKVENLSYYWAAEGIFQPRHYDGETIRDVGDVYIEELVRRNMV 482          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: RP8L3_ARATH (Disease resistance RPP8-like protein 3 OS=Arabidopsis thaliana GN=RPP8L3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.282e-23
Identity = 67/200 (33.50%), Postives = 106/200 (53.00%), Query Frame = 2
Query:   53 WRRIYEGLPKGKGSSIIITTRNGKVSQKMGVKKARMHF-PKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAEND-------DSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLV 628
            W RI E  P+ +G  +++T+RN  V   +      + F  + L+  +SW LF +I       E ++  +E +GKE+V  C GLPLA+K +GG++  K  T +EW+R ++N   ++           +SV   L LSY++LP  LK CFL  + +PED  I+   L  +W  EG     +G + +++GED    L  R LV
Sbjct:  279 WDRIKEVFPRKRGWKMLLTSRNEGVG--LHADPTCLSFRARILNPKESWKLFERIV--PRRNETEYEEMEAIGKEMVTYCGGLPLAVKVLGGLLANKH-TASEWKRVSENIGAQIVGKSCLDDNSLNSVYRILSLSYEDLPTDLKHCFLYLAHFPEDYKIKTRTLYSYWAAEGIY---DGLTILDSGEDYLEELVRRNLV 470          
BLAST of CX288064 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.592e-23
Identity = 66/197 (33.50%), Postives = 108/197 (54.82%), Query Frame = 2
Query:   53 WRRIYEGLPKG-KGSSIIITTRNGKVSQKMGVKKARMHFPKFLSEDDSWLLFRKIAFAATEGECQHPSLEGVGKEIVEKCKGLPLAIKAVGGMMLYKPPTYNEWRRTADNFRDELAENDDSVMASLQLSYDELPPYLKSCFLSFSVYPEDCVIRKEQLVYWWIGEGFVPQRNGRSSIEAGEDCFSGLTNRCLVEVVD 640
            W ++   L  G +G+SI+ TTR  KV   MG  +   +    LS  DS LLF + AF   +    +P+L  +GKEIV+KC G+PLA K +GG++ +K    +EW    DN    L +++ S++ +L+LSY  LP  L+ CF   +V+P+D  + KE L+  W+  GF+  +      + G + ++ L  R   + ++
Sbjct:  273 WAKLRAVLTVGARGASILATTRLEKVGSIMGTLQP--YHLSNLSPHDSLLLFMQRAFGQQKEA--NPNLVAIGKEIVKKCGGVPLAAKTLGGLLRFKREE-SEWEHVRDNEIWSLPQDESSILPALRLSYHHLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIE 464          
The following BLAST results are available for this feature:
BLAST of CX288064 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
R13L4_ARATH1.435e-7362.75Disease resistance RPP13-like protein 4 OS=Arabido... [more]
DRL9_ARATH2.270e-2435.61Probable disease resistance protein At1g58602 OS=A... [more]
RGA3_SOLBU2.965e-2435.05Putative disease resistance protein RGA3 OS=Solanu... [more]
DRL7_ARATH3.873e-2433.17Probable disease resistance protein At1g58390 OS=A... [more]
DRL4_ARATH3.873e-2435.27Putative disease resistance protein At1g50180 OS=A... [more]
RPM1_ARATH1.472e-2332.18Disease resistance protein RPM1 OS=Arabidopsis tha... [more]
R13L1_ARATH2.510e-2333.16Putative disease resistance RPP13-like protein 1 O... [more]
DRL10_ARATH2.510e-2333.66Probable disease resistance protein RDL5/RF45 OS=A... [more]
RP8L3_ARATH4.282e-2333.50Disease resistance RPP8-like protein 3 OS=Arabidop... [more]
RGA4_SOLBU5.592e-2333.50Putative disease resistance protein RGA4 OS=Solanu... [more]

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Properties
Property NameValue
Genbank descriptionC01016D06SK Veg1 Citrus clementina cDNA clone C01016D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288064 ID=CX288064; Name=CX288064; organism=Citrus clementina; type=EST; length=699bp
CTCGTGCCGAATTCGGCACAGGCCTCGTGCCGAATTCGGCACGAGGGCTT
GGTGGCGTAGAATCTATGAAGGATTACCTAAGGGAAAAGGAAGTAGTATC
ATTATCACCACAAGAAATGGGAAAGTCTCCCAGAAAATGGGAGTGAAGAA
GGCAAGGATGCATTTTCCCAAATTCCTCAGTGAGGATGATAGCTGGTTGT
TGTTCAGAAAAATAGCATTTGCAGCAACTGAAGGAGAGTGTCAGCACCCT
TCGCTAGAGGGTGTTGGAAAGGAGATTGTAGAGAAGTGCAAGGGGCTTCC
ATTAGCAATCAAGGCAGTTGGAGGCATGATGCTCTATAAACCACCAACTT
ATAATGAATGGAGGCGAACGGCAGATAATTTTCGGGATGAACTGGCAGAA
AATGACGACTCTGTGATGGCTTCACTGCAGCTTAGTTACGATGAGCTCCC
CCCTTACCTGAAATCATGCTTTCTGAGTTTCTCTGTTTATCCTGAGGACT
GTGTCATAAGGAAAGAGCAATTAGTTTACTGGTGGATTGGCGAGGGATTT
GTCCCTCAGAGAAATGGTAGATCATCAATTGAAGCTGGAGAAGATTGTTT
CTCAGGGTTAACAAATAGATGCTTGGTAGAAGTGGTTGATAAGGCTTACA
TAAAATGATTAGCACTTGCAAATTCATGACATGGTCCGTGACTTGGTGA
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