CX288107

Overview
NameCX288107
Unique NameCX288107
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12194 contig Ccv1_Contig12194:1154..1894. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 211.075 bits (536), Expect = 5.181e-54
Identity = 100/108 (92.59%), Postives = 102/108 (94.44%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 326
            DVNAAFRKAAEGPLKGIL VCDVPLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA KWPG    GSGDPLEDFC+TNPADEECKVYE
Sbjct:  344 DVNAAFRKAAEGPLKGILDVCDVPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANKWPGTPKVGSGDPLEDFCETNPADEECKVYE 451          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PB_ARATH (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.177e-52
Identity = 96/108 (88.89%), Postives = 101/108 (93.52%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAGGSGDPLEDFCQTNPADEECKVYE 326
            DVN AFRKAA GP+KGIL VCD PLVSVDFRCSDVS+TIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA+KWPG  A GSGDPLEDFC+TNPADEECKVY+
Sbjct:  340 DVNEAFRKAANGPMKGILDVCDAPLVSVDFRCSDVSTTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVASKWPGAEAVGSGDPLEDFCKTNPADEECKVYD 447          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.236e-47
Identity = 91/109 (83.49%), Postives = 96/109 (88.07%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPGVAAG-GSGDPLEDFCQTNPADEECKVYE 326
            DVN AFRKAA GPLKG+L VCD+PLVSVDFRCSD SSTIDSSLTMVMG DMVKVVAWYDNEWGYSQRVVDLA LVA KWPG+     SGDPLEDFC+ NPADEECK+YE
Sbjct:  343 DVNNAFRKAAAGPLKGVLDVCDIPLVSVDFRCSDFSSTIDSSLTMVMGGDMVKVVAWYDNEWGYSQRVVDLADLVANKWPGLEGSVASGDPLEDFCKDNPADEECKLYE 451          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PB_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPB PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.525e-41
Identity = 76/81 (93.83%), Postives = 78/81 (96.30%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKWPG 245
            DVNAAFRKAA+GPLKG+LAVCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVA  WPG
Sbjct:  313 DVNAAFRKAADGPLKGVLAVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVANNWPG 393          

HSP 2 Score: 29.261 bits (64), Expect = 2.525e-41
Identity = 13/23 (56.52%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  268 THWRISARQTLLMRSAKFMKLKF 336
            +HW   ARQ LLMR+AK M  +F
Sbjct:  402 SHWMSFARQILLMRNAKSMNNRF 424          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 5.042e-33
Identity = 65/79 (82.28%), Postives = 74/79 (93.67%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 239
            +VNAAFR++A+  LKGIL+VCD PLVS+DFRC+DVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA KW
Sbjct:  322 EVNAAFRESADNELKGILSVCDEPLVSIDFRCTDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANKW 400          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 8.600e-33
Identity = 68/79 (86.08%), Postives = 71/79 (89.87%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 239
            +VNAAFR AAE  LKGIL VCD PLVSVDFRCSDVSSTIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  154 EVNAAFRDAAEKELKGILDVCDEPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 232          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 65/79 (82.28%), Postives = 73/79 (92.41%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 239
            +VNAAFR+AA+  LKGIL VCD PLVSVDFRCSDVSST+D+SLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA +W
Sbjct:  313 EVNAAFREAADKELKGILDVCDEPLVSVDFRCSDVSSTVDASLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANQW 391          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.622e-31
Identity = 65/79 (82.28%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 239
            +VNAAFR +AE  LKGIL VCD PLVSVDFRCSD S+TIDSSLTMVMGDDMVKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  317 EVNAAFRDSAEKELKGILDVCDEPLVSVDFRCSDFSTTIDSSLTMVMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNW 395          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.051e-30
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 239
            +VN AFR AA   L GIL VCDVPLVSVDFRCSDVSSTID+SLTMVMGDDMVKV++WYDNEWGYSQRVVDLA + A +W
Sbjct:  324 EVNQAFRDAAANELTGILEVCDVPLVSVDFRCSDVSSTIDASLTMVMGDDMVKVISWYDNEWGYSQRVVDLADICANQW 402          
BLAST of CX288107 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 3.059e-30
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 3
Query:    3 DVNAAFRKAAEGPLKGILAVCDVPLVSVDFRCSDVSSTIDSSLTMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVATKW 239
            +VN AFR++A   L GIL+VCD PLVSVDFRC+DVSST+DSSLTMVMGDD+VKV+AWYDNEWGYSQRVVDLA +VA  W
Sbjct:  326 EVNEAFRESAAKELTGILSVCDEPLVSVDFRCTDVSSTVDSSLTMVMGDDLVKVIAWYDNEWGYSQRVVDLADIVANNW 404          
The following BLAST results are available for this feature:
BLAST of CX288107 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
G3PB_PEA5.181e-5492.59Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_ARATH2.177e-5288.89Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL1.236e-4783.49Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_TOBAC2.525e-4193.83Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PA_SPIOL5.042e-3382.28Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL8.600e-3386.08Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_TOBAC2.502e-3282.28Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH1.622e-3182.28Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE1.051e-3079.75Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA3.059e-3077.22Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionC01016H01SK Veg1 Citrus clementina cDNA clone C01016H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288107 ID=CX288107; Name=CX288107; organism=Citrus clementina; type=EST; length=741bp
AAGATGTTAATGCAGCCTTCAGAAAGGCTGCTGAGGGGCCACTGAAGGGC
ATATTGGCCGTCTGCGATGTTCCACTGGTGTCGGTGGACTTCCGATGCTC
TGATGTTTCCTCCACCATTGACTCTTCATTGACCATGGTCATGGGTGATG
ATATGGTCAAGGTTGTTGCCTGGTACGACAATGAATGGGGATACAGCCAA
AGGGTTGTCGATTTGGCGCATTTGGTTGCAACCAAGTGGCCAGGCGTGGC
TGCAGGCGGAAGCGGAGACCCATTGGAGGATTTCTGCCAGACAAACCCTG
CTGATGAGGAGTGCAAAGTTTATGAAGCTTAAATTCTTTCTTAATTGGTT
GGCTAATTAATTACATAGGTTTTTCGCAGCCTTTGTCACAAAATGCTTTT
ATATTAATGACAACTGAGTGAGTTGAACAGACAATTTATCAAATTATATG
TCAAGCCGATGATCTTGCAGAATCAATTGGTCTTTGTTAGAGACACGTAA
CATTGAGAATGAGAAAACAGAACTACTGTATAAAAAAAAAAAAAAAAAAA
ACTCGCCTCGTGCCGAATTCGGCACGAGGCTTGTTCCAAGAATGACATTG
GATGAGCTCTTTGAAAAAAAGGCGAAGTTGCTAAGGCTGTTTTGGAGGAA
CTTGAGAAGGTGATGGGTGCATATGGATATAGCATTGAGCACATATTGAT
GGTAGACATTATACCTGATCCTGCTGTGCGCAAGGCATGAA
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