CX288111

Overview
NameCX288111
Unique NameCX288111
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig103 contig Ccv1_Contig103:1..709. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288111 vs. ExPASy Swiss-Prot
Match: Y4115_ARATH (Uncharacterized protein At4g01150, chloroplastic OS=Arabidopsis thaliana GN=At4g01150 PE=1 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.774e-40
Identity = 95/169 (56.21%), Postives = 117/169 (69.23%), Query Frame = 3 
Query:   66 VSMAATAYAAVLTPRVPSTTTVKVKSSHCFALPCLXXXXXXXXXXXX-IKQVSES--RRFPLLQVRASSSEETSTVDADELFSDLKEKWDAIENKSTVLLYGGGAIVAVWLSSTIVGAINSVXXXXXXXXXXXXXYTGWFVYRYLLFKSSRKELATDIEALKKKIAGTE 563
            +S+AA++  AV+ PRVP+ +T       C A+P L             +K VS +  ++  LL+ RASS EETS++D +EL +DLKEKWD +ENKSTVL+YGGGAIVAVWLSS +VGAINSV             YTGWFVYRYLLFKSSRKELA DIE+LKKKIAG+E
Sbjct:    3 ISVAASSSMAVMVPRVPAVST------RCSAVPYLPPRSFGRSSFTVPLKLVSGNGLQKVELLKTRASS-EETSSIDTNELITDLKEKWDGLENKSTVLIYGGGAIVAVWLSSIVVGAINSVPLLPKVMELVGLGYTGWFVYRYLLFKSSRKELAEDIESLKKKIAGSE 164
The following BLAST results are available for this feature:
BLAST of CX288111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4115_ARATH1.774e-4056.21Uncharacterized protein At4g01150, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC01016H05SK Veg1 Citrus clementina cDNA clone C01016H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288111 ID=CX288111; Name=CX288111; organism=Citrus clementina; type=EST; length=709bp
TGCACGAATTCGGCACGAGGGCATTACAAATCGAAAAGAAAAAGAAAGAA
CACCACAAATCAAAAGTATCAATGGCAGCGACGGCGTACGCGGCGGTGTT
AACTCCACGTGTCCCCTCAACCACCACCGTCAAAGTCAAATCTTCTCACT
GCTTTGCTCTTCCCTGCCTCCCTCCTCGTTCGTCAACGCCACCATTCTCT
TCTTCCATTAAACAAGTTTCAGAGTCGAGAAGGTTTCCTTTGCTTCAGGT
TAGAGCCTCTTCCTCAGAAGAGACATCCACAGTTGATGCAGATGAACTTT
TTTCAGACTTGAAGGAAAAGTGGGATGCCATTGAAAACAAGTCCACGGTA
CTTCTCTATGGAGGTGGGGCAATAGTGGCTGTTTGGTTATCCTCAACTAT
TGTTGGTGCCATCAATTCAGTGCCTTTGCTTCCCAAACTCTTGGAGTTGA
TTGGACTTGGTTATACTGGATGGTTTGTCTACAGATACCTTCTCTTCAAG
TCAAGCAGAAAAGAACTAGCCACGGATATTGAAGCACTGAAGAAGAAGAT
TGCTGGAACTGAATAGATTGTACATTCTGGAGGCAATTCATGTTTGTCCC
TGATAGTCATTTATTTTGGTCCTCTATCATTGCATATGAGGCACTTGTAT
CCTGTAGAGTAGGCTGCGTACGGATTCGTTTTATCCCTGTATTTTCCAGT
ATATCCCTG
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