CX288156

Overview
NameCX288156
Unique NameCX288156
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length385
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288156 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 3.983e-28
Identity = 57/70 (81.43%), Postives = 63/70 (90.00%), Query Frame = 3
Query:    3 EQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQY 212
            EQENVKRVQLA+ YLS+AALG+ANADAI  G FYGK AQQ+N+PVPEGCTDP AENFDPTARSDDG+C Y
Sbjct:  403 EQENVKRVQLAETYLSQAALGDANADAIGRGTFYGKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVY 472          
BLAST of CX288156 vs. ExPASy Swiss-Prot
Match: RCA_ORYSJ (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Oryza sativa subsp. japonica GN=RCA PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 4.403e-27
Identity = 56/72 (77.78%), Postives = 67/72 (93.06%), Query Frame = 3
Query:    3 EQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQYT 215
            EQENVKRVQLA++YLSEAALG+AN+DA+++G+FYG+ AQQ  N+PVPEGCTDP A+NFDPTARSDDGSC YT
Sbjct:  394 EQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYGQGAQQAGNLPVPEGCTDPVAKNFDPTARSDDGSCLYT 465          
BLAST of CX288156 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 3.728e-26
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 3
Query:    3 EQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYTL 218
            EQENVKRVQLAD+Y+S AALG+AN DAI  G F+GKAAQQ+++PV +GCTDP A+N+DPTARSDDGSC Y L
Sbjct:  401 EQENVKRVQLADQYMSSAALGDANKDAIDRGTFFGKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTYNL 472          
BLAST of CX288156 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.304e-26
Identity = 52/71 (73.24%), Postives = 63/71 (88.73%), Query Frame = 3
Query:    3 EQENVKRVQLADKYLSEAALGEANADAIQSGNFYGKAAQQMNVPVPEGCTDPTAENFDPTARSDDGSCQYT 215
            EQ+NVKRVQLAD Y+S+AALG+AN DA+++G+FYGK AQQ  +PVPEGCTD  A+N+DPTARSDDGSC YT
Sbjct:  393 EQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYT 463          
BLAST of CX288156 vs. ExPASy Swiss-Prot
Match: RCA1_LARTR (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Larrea tridentata GN=RCA1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 8.304e-26
Identity = 58/72 (80.56%), Postives = 64/72 (88.89%), Query Frame = 3
Query:    3 EQENVKRVQLADKYLSEAALGEANADAIQSGNFY-GKAAQQM-NVPVPEGCTDPTAENFDPTARSDDGSCQY 212
            EQENVKRVQLADKY+SEAALG+AN DAI+ G FY G+AAQQ+ NVPVPEGCTDP A N+DPTARSDDGSC Y
Sbjct:  403 EQENVKRVQLADKYMSEAALGDANNDAIKRGTFYGGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVY 474          
The following BLAST results are available for this feature:
BLAST of CX288156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RCA_ARATH3.983e-2881.43Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ORYSJ4.403e-2777.78Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL3.728e-2673.61Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU8.304e-2673.24Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_LARTR8.304e-2680.56Ribulose bisphosphate carboxylase/oxygenase activa... [more]
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Properties
Property NameValue
Genbank descriptionC01017D03SK Veg1 Citrus clementina cDNA clone C01017D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288156 ID=CX288156; Name=CX288156; organism=Citrus clementina; type=EST; length=385bp
AAGAGCAAGAGAATGTGAAGAGAGTTCAGTTGGCTGACAAGTATTTGAGT
GAGGCCGCTCTTGGTGAAGCTAATGCAGATGCTATTCAGAGTGGAAATTT
CTATGGCAAAGCAGCCCAGCAAATGAATGTTCCAGTTCCTGAAGGATGTA
CTGATCCTACTGCAGAAAACTTTGATCCAACTGCAAGAAGTGATGATGGA
AGCTGCCAATACACGCTTTAGGCCTTGTTTCTAAGGGTTGAGAAGTGTCG
CACTTTGCTTAGGATGTGAGATATTCAAATAATATTGTTGCATTTTCATT
TCTTTGTTAATTAGAAAGAATCCTCTAATTTTGTGTTATATCACAACTCT
TTATTCGATCTTTAAAAAAAAAAAAAAAAAAAAAA
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