CX288157

Overview
NameCX288157
Unique NameCX288157
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length596
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10839 contig Ccv1_Contig10839:975..1570. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 1.776e-50
Identity = 98/147 (66.67%), Postives = 118/147 (80.27%), Query Frame = 2
Query:    2 ADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            ++GLVAGQV+D+ SEG  D+G+EHLEFIH HKT                  D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKA PLIALANYIAYR N
Sbjct:  211 SEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 6.748e-50
Identity = 101/147 (68.71%), Postives = 118/147 (80.27%), Query Frame = 2
Query:    2 ADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            A+GLVAGQV+DINSEG  ++ +E LEFIH HKT                 TD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIALANYIA+RQN
Sbjct:  224 AEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.273e-48
Identity = 95/148 (64.19%), Postives = 118/148 (79.73%), Query Frame = 2
Query:    5 DGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            +GLVAGQV+DI+SEG    D+G+EHLEFIH HKT                 +D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL  FD +K  PL+ALANYIAYRQN
Sbjct:  224 EGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 7.721e-46
Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 2
Query:    5 DGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            +GLVAGQV+DI+SEG    ++G+EHL+FIH HKT                 +D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL  FD +K  PL+ALANYIA RQN
Sbjct:  219 EGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 4.237e-44
Identity = 92/146 (63.01%), Postives = 107/146 (73.29%), Query Frame = 2
Query:    5 DGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            +GLVAGQV DI   G   + +E LEFIH HKT                 T+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL  FD  KA PLIALA+YIAYR N
Sbjct:  224 EGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.154e-41
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 2
Query:    8 GLVAGQVIDINSE--GQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            GLVAGQ+ID+ SE      +G+EHLEFIH HKT                 T+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL  FD  KA PL+ALA+YIA R N
Sbjct:  214 GLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.276e-40
Identity = 85/147 (57.82%), Postives = 106/147 (72.11%), Query Frame = 2
Query:    8 GLVAGQVIDINSEG--QKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            GLVAGQ  D++SEG  Q D+G+E LE+IH HKT                 T+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+  +KL +DA++ L  FD +K  PLIAL N+IA R +
Sbjct:  226 GLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.410e-39
Identity = 84/145 (57.93%), Postives = 102/145 (70.34%), Query Frame = 2
Query:    8 GLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 436
            GLVAGQ +DI+SEG    ++G+EHLEFIH HKT                 +D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+   +L KDA+Q L  F  EK  PL+AL  +IA R
Sbjct:  230 GLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.753e-35
Identity = 71/150 (47.33%), Postives = 104/150 (69.33%), Query Frame = 2
Query:    5 DGLVAGQVIDINSEGQ----KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            +GLVAGQ  D+  E      +D  + +LE +H HKT                 +D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+  KLTYPK++G++ +++ A +LN++AQ+ L  FD +K VPL++LA+YI  RQN
Sbjct:  187 EGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336          
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.048e-26
Identity = 60/145 (41.38%), Postives = 91/145 (62.76%), Query Frame = 2
Query:    8 GLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442
            GLV GQ+ID++SEG+ D  +E L FIH HKT                  + ++ +   +A+ IGL FQ++DD+LD+  + ++LGK+ GKDL   K TYP   G+EES K A+ L ++A++++  FD  KA+PLIA+A++I  R N
Sbjct:  157 GLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300          
The following BLAST results are available for this feature:
BLAST of CX288157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GGPPS_CATRO1.776e-5066.67Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_HEVBR6.748e-5068.71Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP1_ARATH1.273e-4864.19Geranylgeranyl pyrophosphate synthetase 1, chlorop... [more]
GGPPS_SINAL7.721e-4662.16Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPPS_CAPAN4.237e-4463.01Geranylgeranyl pyrophosphate synthetase, chloropla... [more]
GGPP3_ARATH1.154e-4158.50Geranylgeranyl pyrophosphate synthetase 3, chlorop... [more]
GGPP4_ARATH1.276e-4057.82Geranylgeranyl pyrophosphate synthetase 4 OS=Arabi... [more]
GGPP2_ARATH1.410e-3957.93Geranylgeranyl pyrophosphate synthetase 2 OS=Arabi... [more]
GGPP6_ARATH2.753e-3547.33Geranylgeranyl pyrophosphate synthetase 6, mitocho... [more]
CRTE_CYAPA1.048e-2641.38Geranylgeranyl pyrophosphate synthetase homolog OS... [more]

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Properties
Property NameValue
Genbank descriptionC01017D04SK Veg1 Citrus clementina cDNA clone C01017D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288157 ID=CX288157; Name=CX288157; organism=Citrus clementina; type=EST; length=596bp
AGCTGATGGACTTGTCGCCGGCCAAGTTATTGATATCAATTCTGAAGGCC
AAAAAGATTTGGGAATTGAGCATCTTGAATTTATACATGAACACAAAACT
GCAGCTTTATTGGAGGCTGCTGTTGTTCTTGGAGCCATATTGGGCGGCGG
AACTGACAACGAAGTCGAGAAACTGAGAACTTTTGCTCGCTGTATTGGGC
TTTTGTTTCAAGTAGTTGATGATATCCTCGATCTGACCAAGTCGTCAAAA
GAATTGGGGAAGACTGCTGGCAAAGATTTGGTGGCCGATAAGTTAACTTA
TCCCAAGTTGCTGGGGATCGAAGAATCGAAGAAGTTAGCTGATAAGTTGA
ATAAAGATGCTCAACAGCAATTGTCGGAATTTGATCAGGAAAAGGCCGTG
CCTTTGATTGCTTTGGCTAACTATATTGCTTATAGGCAGAATTGATGTTT
TTAATTGGGTTAATGCCTCCAGGGGAATTGTGTGTCGTTTGATTTGTAAT
TGTATATTTAAGCTTACCTAATCTTGAGAGATCAACTGGTGGGCTTTTTT
AATATTTTATAAACATTCTTCTTATTCAGCGATGGTTAGTCAAATT
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