CX288157
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_CATRO (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1) HSP 1 Score: 198.749 bits (504), Expect = 1.776e-50 Identity = 98/147 (66.67%), Postives = 118/147 (80.27%), Query Frame = 2 Query: 2 ADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 ++GLVAGQV+D+ SEG D+G+EHLEFIH HKT D ++ KLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGI++S++ A+KLN++AQ+QL+EFD EKA PLIALANYIAYR N Sbjct: 211 SEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVLGAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIDKSREFAEKLNREAQEQLAEFDPEKAAPLIALANYIAYRDN 357
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_HEVBR (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1) HSP 1 Score: 196.823 bits (499), Expect = 6.748e-50 Identity = 101/147 (68.71%), Postives = 118/147 (80.27%), Query Frame = 2 Query: 2 ADGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 A+GLVAGQV+DINSEG ++ +E LEFIH HKT TD EVEKLR +AR IGLLFQVVDDILD+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIALANYIA+RQN Sbjct: 224 AEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIALANYIAHRQN 370
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP1_ARATH (Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2) HSP 1 Score: 192.586 bits (488), Expect = 1.273e-48 Identity = 95/148 (64.19%), Postives = 118/148 (79.73%), Query Frame = 2 Query: 5 DGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 +GLVAGQV+DI+SEG D+G+EHLEFIH HKT +D+E+E+LR FARCIGLLFQVVDDILD+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL FD +K PL+ALANYIAYRQN Sbjct: 224 EGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLLALANYIAYRQN 371
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_SINAL (Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 7.721e-46 Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 2 Query: 5 DGLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 +GLVAGQV+DI+SEG ++G+EHL+FIH HKT +D E+E+LR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDL+ADKLTYPKL+G+E+S++ A+KLN +A+ QL FD +K PL+ALANYIA RQN Sbjct: 219 EGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALANYIANRQN 366
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPPS_CAPAN (Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1) HSP 1 Score: 177.563 bits (449), Expect = 4.237e-44 Identity = 92/146 (63.01%), Postives = 107/146 (73.29%), Query Frame = 2 Query: 5 DGLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 +GLVAGQV DI G + +E LEFIH HKT T+ EVEKLR FARCIGLLFQVVDDILD+TKSS+ELGKTAGKDLV DK TYPKLLG+E++K+ A +LN++A+QQL FD KA PLIALA+YIAYR N Sbjct: 224 EGLVAGQVADIKCTGNASVSLETLEFIHVHKTAALLESSVVLGAILGGGTNVEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVVDKTTYPKLLGLEKAKEFAAELNREAKQQLEGFDSRKAAPLIALADYIAYRDN 369
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP3_ARATH (Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1) HSP 1 Score: 169.474 bits (428), Expect = 1.154e-41 Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 2 Query: 8 GLVAGQVIDINSE--GQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 GLVAGQ+ID+ SE +G+EHLEFIH HKT T+ E+EKLR +ARCIGLLFQVVDDILD+TKS++ELGKTAGKD++A KLTYP+L+G+E SK++A+KL ++A++QL FD KA PL+ALA+YIA R N Sbjct: 214 GLVAGQMIDLASERLNPDKVGLEHLEFIHLHKTAALLEAAAVLGVIMGGGTEEEIEKLRKYARCIGLLFQVVDDILDVTKSTEELGKTAGKDVMAGKLTYPRLIGLERSKEVAEKLRREAEEQLLGFDPSKAAPLVALASYIACRHN 360
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP4_ARATH (Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.276e-40 Identity = 85/147 (57.82%), Postives = 106/147 (72.11%), Query Frame = 2 Query: 8 GLVAGQVIDINSEG--QKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 GLVAGQ D++SEG Q D+G+E LE+IH HKT T+ E+EK+R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD VA KLTYPK++G+E+SK+ +KL +DA++ L FD +K PLIAL N+IA R + Sbjct: 226 GLVAGQAKDLSSEGLEQNDVGLEDLEYIHVHKTGSLLEASAVIGAVIGGGTEKEIEKVRNFARCIGLLFQVVDDILDETKSSEELGKTAGKDKVAGKLTYPKVIGVEKSKEFVEKLKRDAREHLQGFDSDKVKPLIALTNFIANRNH 372
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP2_ARATH (Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2) HSP 1 Score: 162.54 bits (410), Expect = 1.410e-39 Identity = 84/145 (57.93%), Postives = 102/145 (70.34%), Query Frame = 2 Query: 8 GLVAGQVIDINSEGQ--KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYR 436 GLVAGQ +DI+SEG ++G+EHLEFIH HKT +D E+E +R FARCIGLLFQVVDDILD TKSS+ELGKTAGKD +A KLTYPKL+G+E+SK+ +L KDA+Q L F EK PL+AL +IA R Sbjct: 230 GLVAGQAMDISSEGLDLNEVGLEHLEFIHVHKTAVLLETAAVLGAIIGGGSDEEIESVRKFARCIGLLFQVVDDILDETKSSEELGKTAGKDQLAGKLTYPKLIGLEKSKEFVKRLTKDARQHLQGFSSEKVAPLVALTTFIANR 374
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: GGPP6_ARATH (Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 2.753e-35 Identity = 71/150 (47.33%), Postives = 104/150 (69.33%), Query Frame = 2 Query: 5 DGLVAGQVIDINSEGQ----KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 +GLVAGQ D+ E +D + +LE +H HKT +D E+E+L+++ARC+GL+FQV+DD+LD TKSS+ELGKTAGKDL+ KLTYPK++G++ +++ A +LN++AQ+ L FD +K VPL++LA+YI RQN Sbjct: 187 EGLVAGQAADLAGERMSFKNEDDELRYLELMHVHKTAVLVEAAAVVGAIMGGGSDEEIERLKSYARCVGLMFQVMDDVLDETKSSEELGKTAGKDLITGKLTYPKVMGVDNAREYAKRLNREAQEHLQGFDSDKVVPLLSLADYIVKRQN 336
BLAST of CX288157 vs. ExPASy Swiss-Prot
Match: CRTE_CYAPA (Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.048e-26 Identity = 60/145 (41.38%), Postives = 91/145 (62.76%), Query Frame = 2 Query: 8 GLVAGQVIDINSEGQKDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 442 GLV GQ+ID++SEG+ D +E L FIH HKT + ++ + +A+ IGL FQ++DD+LD+ + ++LGK+ GKDL K TYP G+EES K A+ L ++A++++ FD KA+PLIA+A++I R N Sbjct: 157 GLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAKEKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIKQAELLVEEAKEEILYFD-NKAIPLIAIADFIVNRNN 300 The following BLAST results are available for this feature:
BLAST of CX288157 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288157 ID=CX288157; Name=CX288157; organism=Citrus clementina; type=EST; length=596bpback to top |