CX288176

Overview
NameCX288176
Unique NameCX288176
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10277 contig Ccv1_Contig10277:18..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288176 vs. ExPASy Swiss-Prot
Match: Y2446_ARATH (Uncharacterized protein At2g34460, chloroplastic OS=Arabidopsis thaliana GN=At2g34460 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 46/133 (34.59%), Postives = 69/133 (51.88%), Query Frame = 1 
Query:  283 FVAGATGKVGSRTVRELLKLGFRVRAGVRSVQRAENLVQSVKQMKLDGKLANKGIQPVEMLELVECDLEKRGQIEPALGNASVVICCIGASEKEVFDITGPYRIDFQATKNLVDAATIAKVNHFIMVSSLGTN 681
            FVAGATG+ G R V +LL  GF V+AGVR V++A+   +    +++      +G  P ++ E++  D             +  VIC  G   +  FDI  P+++D   T NLVDA     V  F++VSS+  N
Sbjct:   50 FVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSFKDDPSLQIVRADVTEG--PDKLAEVIGDD-------------SQAVICATGF--RPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSILVN 165
The following BLAST results are available for this feature:
BLAST of CX288176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y2446_ARATH6.655e-1134.59Uncharacterized protein At2g34460, chloroplastic O... [more]
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Properties
Property NameValue
Genbank descriptionC01017E11SK Veg1 Citrus clementina cDNA clone C01017E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288176 ID=CX288176; Name=CX288176; organism=Citrus clementina; type=EST; length=714bp
GAATTCGGCACGAGGAATAATTTTTATGTTGAAATGGAGATTTGCTCCTT
GCAATCACAAACTCTATCATCCATACCAAGCCCTCTGTCCAGAAATGGCC
TCATTGTAAAATCTTTTGGGTCCTGTCAAATCCTCAAATTCCCCAGTTCA
AAGAAATTTTCACATCCGAGAAAGCTCAAGCTTCCTGATTTCAAAGCTCA
AGCTTCAGGCACAATCAATATCCGTTCAGAGGCAGTTGGGGTGACTCCGA
CAAAAGCAGATTCCAAAGATGACAATCTTGCGTTTGTTGCTGGTGCTACC
GGTAAAGTTGGCTCTCGAACAGTAAGGGAGCTCTTGAAACTTGGTTTTCG
AGTTAGAGCTGGAGTCAGGAGTGTTCAGAGAGCAGAAAATCTTGTCCAGA
GTGTTAAGCAAATGAAGCTCGATGGTAAACTCGCAAACAAAGGAATTCAA
CCTGTAGAAATGCTTGAACTTGTGGAATGTGACTTGGAGAAACGAGGTCA
GATTGAACCAGCTTTAGGCAACGCATCTGTGGTTATATGTTGCATTGGTG
CTAGTGAGAAGGAGGTCTTCGATATTACAGGACCTTATAGGATTGACTTC
CAGGCTACCAAAAACCTTGTTGATGCAGCAACTATTGCAAAAGTTAACCA
CTTTATCATGGTTTCATCATTGGGAACAAATAAATTTGGATTTCCTGCAG
CTATTCTAAATTGT
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