CX288181

Overview
NameCX288181
Unique NameCX288181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig652 contig Ccv1_Contig652:118..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CYSP_SCHJA (Cathepsin B-like cysteine proteinase OS=Schistosoma japonicum GN=CATB PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.365e-27
Identity = 73/200 (36.50%), Postives = 106/200 (53.00%), Query Frame = 1
Query:   76 VISSQTFAEG-VVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHF--GMNLSLSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            ++S  TF E  V ++       L D +I  +NE+P AGWKA ++ +F  +++   + L+G +     +       V  HD ++++P  FD+R  WP C +IS+I DQ  CGSCWAFGAVEA++DR CI    G +  LSA DL++             +P  AW Y+V  G+ T  S          H GC+P YP PKC
Sbjct:    8 IVSLFTFLEAHVTTRNNQRIEPLSDEMISFINEHPDAGWKADKSDRF--HSLDDARILMGARKEDAEMKRNRRPTVDHHDLNVEIPSQFDSRKKWPHCKSISQIRDQSRCGSCWAFGAVEAMTDRICIQSGGGQSAELSALDLIS-CCKDCGDGCQGGFPGVAWDYWVKRGIVTGGSKE-------NHTGCQP-YPFPKC 196          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CYSP_SCHMA (Cathepsin B-like cysteine proteinase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.670e-26
Identity = 75/202 (37.13%), Postives = 103/202 (50.99%), Query Frame = 1
Query:   67 ILGVISSQTFAEGVVSKLKLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLG--VPVKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            IL + S  TF E  +S        L D II  +NE+P AGW+A ++ +F  +++   +  +G +     L       V  +D ++++P +FD+R  WP C +I+ I DQ  CGSCW+FGAVEA+SDR CI  G   N+ LSA DLL                  AW Y+V  G+ T  S          H GCEP YP PKC
Sbjct:    5 ILCIASLITFLEAHISVKNEKFEPLSDDIISYINEHPNAGWRAEKSNRF--HSLDDARIQMGARREEPDLRRKRRPTVDHNDWNVEIPSNFDSRKKWPGCKSIATIRDQSRCGSCWSFGAVEAMSDRSCIQSGGKQNVELSAVDLLTCCESCGLGCEGGILG-PAWDYWVKEGIVTASSKE-------NHTGCEP-YPFPKC 195          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CATB_MACFA (Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.181e-26
Identity = 75/182 (41.21%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  133 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLS--LSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S  +SA DLL              YP  AW ++   G+    S   +DS    H GC P Y  P C
Sbjct:   24 HPLSDELVNYVNKQ-NTTWQAGHN--FYNVDVSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGIMCGDGCNGGYPAGAWNFWTRKGLV---SGGLYDS----HVGCRP-YSIPPC 187          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CATB_PONAB (Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.288e-26
Identity = 74/182 (40.66%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  133 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLS--LSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            H L D ++  VN+     W+A  N  F N  V   K L G         LG P         + LKLP+SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S  +SA DLL              YP  AW ++   G+    S   ++S    H GC P Y  P C
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDVSYLKKLCGT-------FLGGPKPPQRVMFTEDLKLPESFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLV---SGGLYES----HVGCRP-YSIPPC 187          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CATB_HUMAN (Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.412e-25
Identity = 73/182 (40.11%), Postives = 88/182 (48.35%), Query Frame = 1
Query:  133 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLS--LSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            H L D ++  VN+     W+A  N  F N  +   K L G         LG P         + LKLP SFDAR  WPQC TI  I DQG CGSCWAFGAVEA+SDR CIH   ++S  +SA DLL              YP  AW ++   G+    S   ++S    H GC P Y  P C
Sbjct:   24 HPLSDELVNYVNKR-NTTWQAGHN--FYNVDMSYLKRLCGT-------FLGGPKPPQRVMFTEDLKLPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLV---SGGLYES----HVGCRP-YSIPPC 187          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CPR6_CAEEL (Cathepsin B-like cysteine proteinase 6 OS=Caenorhabditis elegans GN=cpr-6 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.113e-25
Identity = 82/242 (33.88%), Postives = 114/242 (47.11%), Query Frame = 1
Query:   43 LFLTTCVLILGVISSQTFAEGVVSKLK---LDSHILQ---DSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVP------------VKTHDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGC---THPGCE-------------PAYPTPKC 660
            L   +C+++    +     E V+ K +   +DS   +   D +I  VNEN    W A +  +FS+        + G     K  L+GV              KT D  L +P+SFD+R  WP+C +I  I DQ  CGSCWAFGAVEA+SDR CI  H  + ++LSA+DLL+              P++AWRY+V  G+ T  +  Y  + GC     P CE               YPTPKC
Sbjct:    4 LLFLSCIVVAAYCACNDNLESVLDKYRNREIDSEAAELDGDDLIDYVNENQNL-WTAKKQRRFSS--------VYGENDKAKWGLMGVNHVRLSVKGKQHLSKTKDLDLDIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDLLSCCKSCGFGCNGGD-PLAAWRYWVKDGIVTGSN--YTANNGCKPYPFPPCEHHSKKTHFDPCPHDLYPTPKC 233          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CATB_RAT (Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.042e-24
Identity = 72/186 (38.71%), Postives = 92/186 (49.46%), Query Frame = 1
Query:  121 KLDSHILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTH----DKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            K  SH L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP+SFDAR  W  C TI++I DQG CGSCWAFGAVEA+SDR CIH    +N+ +SA DLL              YP  AW ++   G+    S   ++S    H GC P Y  P C
Sbjct:   20 KPSSHPLSDDMINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPNLPERVGFSEDINLPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWNFWTRKGLV---SGGVYNS----HIGCLP-YTIPPC 187          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CATB_MOUSE (Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 6.567e-23
Identity = 69/182 (37.91%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  133 HILQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVK----THDKSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            H L D +I  +N+     W+A RN  F N  +   K L G        +LG P         + + LP++FDAR  W  C TI +I DQG CGSCWAFGAVEA+SDR CIH    +N+ +SA DLL              YP  AW ++   G+    S   ++S    H GC P Y  P C
Sbjct:   24 HPLSDDLINYINKQ-NTTWQAGRN--FYNVDISYLKKLCGT-------VLGGPKLPGRVAFGEDIDLPETFDAREQWSNCPTIGQIRDQGSCGSCWAFGAVEAISDRTCIHTNGRVNVEVSAEDLLTCCGIQCGDGCNGGYPSGAWSFWTKKGLV---SGGVYNS----HVGCLP-YTIPPC 187          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CATB_BOVIN (Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5)

HSP 1 Score: 107.071 bits (266), Expect = 8.577e-23
Identity = 68/179 (37.99%), Postives = 87/179 (48.60%), Query Frame = 1
Query:  139 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDK---SLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            L D ++  VN+     WKA  N  F N  +   K L G       +L G  +   D     + LP+SFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CIH    +N+ +SA D+L              +P  AW ++   G+    S   ++S    H GC P Y  P C
Sbjct:   26 LSDELVNFVNKQ-NTTWKAGHN--FYNVDLSYVKKLCGA------ILGGPKLPQRDAFAADVVLPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHSNGRVNVEVSAEDMLTCCGGECGDGCNGGFPSGAWNFWTKKGLV---SGGLYNS----HVGCRP-YSIPPC 187          
BLAST of CX288181 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.257e-22
Identity = 68/180 (37.78%), Postives = 85/180 (47.22%), Query Frame = 1
Query:  139 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLS--LSANDLLAXXXXXXXXXXXXXYPISAWRYFVHHGVATEESDPYFDSTGCTHPGCEPAYPTPKC 660
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S  +SA DLL+             YP  AWRY+   G+    S   +DS    H GC  AY  P C
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYWTERGLV---SGGLYDS----HVGCR-AYTIPPC 187          
The following BLAST results are available for this feature:
BLAST of CX288181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
CYSP_SCHJA3.365e-2736.50Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CYSP_SCHMA1.670e-2637.13Cathepsin B-like cysteine proteinase OS=Schistosom... [more]
CATB_MACFA2.181e-2641.21Cathepsin B OS=Macaca fascicularis GN=CTSB PE=2 SV... [more]
CATB_PONAB8.288e-2640.66Cathepsin B OS=Pongo abelii GN=CTSB PE=2 SV=1[more]
CATB_HUMAN2.412e-2540.11Cathepsin B OS=Homo sapiens GN=CTSB PE=1 SV=3[more]
CPR6_CAEEL4.113e-2533.88Cathepsin B-like cysteine proteinase 6 OS=Caenorha... [more]
CATB_RAT2.042e-2438.71Cathepsin B OS=Rattus norvegicus GN=Ctsb PE=1 SV=2[more]
CATB_MOUSE6.567e-2337.91Cathepsin B OS=Mus musculus GN=Ctsb PE=1 SV=2[more]
CATB_BOVIN8.577e-2337.99Cathepsin B OS=Bos taurus GN=CTSB PE=1 SV=5[more]
CATB_CHICK4.257e-2237.78Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC01017F04SK Veg1 Citrus clementina cDNA clone C01017F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288181 ID=CX288181; Name=CX288181; organism=Citrus clementina; type=EST; length=662bp
TCTTCGCCCTTCCCGAGCCAGTCATCCATGGCTTCATCTCACCTCTTTCT
TACTACATGTGTGTTAATTCTTGGCGTTATCTCCTCCCAGACTTTTGCAG
AGGGAGTGGTTTCCAAGCTCAAGCTTGATTCTCATATTCTCCAGGATTCA
ATCATCAAAGAAGTGAATGAGAACCCTAAGGCTGGATGGAAAGCTGCCAG
AAATCCTCAATTTTCCAATTACACTGTTGGGCAATTTAAGCACCTTCTTG
GAGTCAAGCCAACACCTAAAGGGCTGCTCTTGGGTGTCCCTGTTAAAACT
CATGACAAATCCTTGAAGTTGCCTAAAAGCTTTGATGCAAGGTCCGCTTG
GCCACAATGCAGCACCATTAGTAGGATCCTAGATCAGGGCCATTGCGGTT
CTTGTTGGGCTTTTGGTGCTGTTGAAGCGCTATCTGATCGTTTCTGCATC
CATTTTGGCATGAACCTATCTCTATCAGCTAATGATCTTTTAGCCTGCTG
TGGCTTTTAGTGTGGAGATGGGTGTGACGGGGGTTATCCAATTTCTGCAT
GGCGATACTTTGTCCACCATGGAGTTGCTACCGAAGAGAGTGATCCCTAC
TTTGATAGTACTGGCTGTACCCACCCTGGTTGTGAGCCGGCATATCCTAC
TCCAAAGTGTGT
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