CX288184

Overview
NameCX288184
Unique NameCX288184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288184_ssr323 microsatellite CX288184_ssr323:323..334. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CX288184 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 67/192 (34.90%), Postives = 100/192 (52.08%), Query Frame = -2
Query:  131 RANSKHHQPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMDRMLEEPFAYSGTWPSPLPSETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLXXXXXXXXXXXXKETQVXXXXXXXXXXXXXXXGDWSAKSYGRYSSRIALPENVQFDKITAEVKDGVLYVTIPKPSHNNGRILDINVQ 706
            + +S   +PQ +  +  V P GL D     RT++QM++TMDRM E+    SG       +  G   S  R PW+IKE E+E  MRFDMPG++K+DVK+ VE+ +L                                  WS +S   Y +R+ LP+N + DKI AE+K+GVL++TIPK      +++D+ +Q
Sbjct:   64 QGSSVEKRPQQRLTM-DVSPFGLLDPLSPMRTMRQMLDTMDRMFEDTMPVSGR------NRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVL--------------------VIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTKVER-KVIDVQIQ 227          
BLAST of CX288184 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 60/185 (32.43%), Postives = 97/185 (52.43%), Query Frame = -2
Query:  131 QPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMDRMLEEPFAYSGTWPSPLPSETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLXXXXXXXXXXXXKETQVXXXXXXXXXXXXXXXGDWSAKSYGRYSSRIALPENVQFDKITAEVKDGVLYVTIPKPSHNNGRILDINVQ 685
            + + ++    + P G+ D +   R+++Q+++TMDR+ E+   + G          GG     R PW+IK+ E+E  MRFDMPG+ K+DVKV VE+ ML                                  WS+++Y  Y +R+ LP+N + DK+ AE+K+GVLY+TIPK      +++D+ VQ
Sbjct:   24 EKKPRRTAMDISPFGILDPWSPMRSMRQILDTMDRVFEDTMTFPGR-------NIGG--GEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDML-----------------VIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTKVER-KVIDVQVQ 181          
BLAST of CX288184 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.407e-23
Identity = 63/175 (36.00%), Postives = 93/175 (53.14%), Query Frame = -2
Query:  131 VPPVGLWDRFPTARTVQQMMETMDRMLEEPFAYSGTWPSPLPSETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLXXXXXXXXXXXXKETQVXXXXXXXXXXXXXXXGDWSAKSYGRYSSRIALPENVQFDKITAEVKDGVLYVTIPKPSHNNGRILDINVQ 655
            + P GL D +   R+++QM++TMDR+ E+     G          GG     R PWEIK+ E+E  MRFDMPG++K+DVKV VE+ +L            ++                    WS KSY  Y +R+ LP+N + +K+ AE+KDGVLY+TIPK       ++D+ +Q
Sbjct:   87 ISPFGLLDPWSPMRSMRQMLDTMDRIFEDAITIPGR-------NIGG--GEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDC-------------------WSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTKIER-TVIDVQIQ 232          
BLAST of CX288184 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 62/174 (35.63%), Postives = 95/174 (54.60%), Query Frame = -2
Query:  134 VPPVGLWDRFPTARTVQQMMETMDRMLEEPFAYSGTWPSPLPSETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLXXXXXXXXXXXXKETQVXXXXXXXXXXXXXXXGDWSAKSYGRYSSRIALPENVQFDKITAEVKDGVLYVTIPKPSHNNGRILDINV 655
            V P G+ D     RT++QM++TMDR+ E+   + G   +   S TG      RTPW+I + ENE  MRFDMPG++K+DVKV VE  ML            ++                    W  ++Y  Y +R++LP+NV  DKI AE+K+GVL+++IPK +    +++D+ +
Sbjct:   87 VSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRA---SGTGEI----RTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKH-----------------SW-GRNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPK-TEVEKKVIDVQI 234          
BLAST of CX288184 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.418e-21
Identity = 62/181 (34.25%), Postives = 95/181 (52.49%), Query Frame = -2
Query:  131 KKRVAPVPPVGLWDRFPTARTVQQMMETMDRMLEEPFAYSGTWPSPLPSETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLXXXXXXXXXXXXKETQVXXXXXXXXXXXXXXXGDWSAKSYGRYSSRIALPENVQFDKITAEVKDGVLYVTIPKPSHNNGRILDINVQ 673
            ++    V P GL D     RT++QMM+TMDR+ E+      T+P      TG      R PW+IK+ ENE  MRFDMPG++K++VKV VE+ +L            K+                   D   ++Y  Y +R++LP+NV  DK+ AE+K+GVL ++IPK      ++ D+ ++
Sbjct:   89 RRMALDVSPFGLLDPMSPMRTMRQMMDTMDRLFEDTM----TFPGSRNRGTGEI----RAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKD-------------------DSWGRNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEK-KVTDVEIK 241          
BLAST of CX288184 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.503e-18
Identity = 58/193 (30.05%), Postives = 93/193 (48.19%), Query Frame = -2
Query:  131 QRANSKHHQPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMDRMLEEPFAYSGTWPSPLPSETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLXXXXXXXXXXXXKETQVXXXXXXXXXXXXXXXGDWSAKSYGRYSSRIALPENVQFDKITAEVKDGVLYVTIPKPSHNNGRILDINVQ 709
            Q+ N+   +P+    +  + P GL D     RT++QM++TMDR+ ++     G   +P  S   G     R PW++ E + E  MRFDMPG+++++VKV VE+  L                                  W  +S   Y  R+ALP+     K+ AE+K+GVL VT+PK +    +++D+ VQ
Sbjct:   67 QQGNAVQRRPRRSSALDGISPFGLVDPMSPMRTMRQMLDTMDRIFDD--VALGFPATPRRSLATG---EVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGW-------------WKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPK-TEVERKVIDVQVQ 240          
BLAST of CX288184 vs. ExPASy Swiss-Prot
Match: HS21C_WHEAT (Small heat shock protein, chloroplastic OS=Triticum aestivum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 57/193 (29.53%), Postives = 95/193 (49.22%), Query Frame = -2
Query:  131 QRANSKHHQPQSKKRVAPVPPVGLWDRFPTARTVQQMMETMDRMLEEPFAYSGTWPSPLPSETGGFNSRGRTPWEIKEGENEYTMRFDMPGMTKQDVKVWVEEKMLXXXXXXXXXXXXKETQVXXXXXXXXXXXXXXXGDWSAKSYGRYSSRIALPENVQFDKITAEVKDGVLYVTIPKPSHNNGRILDINVQ 709
            Q+ N+   +P  ++    + P GL D     RT++QM++TMDR+ ++   +  T  SP         +R R PW+I E E E  MRFDMPG+++++V+V VE+  L             + +                  W  +S   Y  R+ALP+     ++ AE+K+GVL V++PK      +++D+ VQ
Sbjct:   69 QQGNAVQRRP--RRAGFDISPFGLVDPMSPMRTMRQMLDTMDRLFDDAVGFP-TRRSPAA------RARRRMPWDIMEDEKEVKMRFDMPGLSREEVRVMVEDDALVIRGEHKKEAGEGQGEGGDGW-------------WKERSVSSYDMRLALPDECDKSQVRAELKNGVLLVSVPK-RETERKVIDVQVQ 238          
The following BLAST results are available for this feature:
BLAST of CX288184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
HS25P_ARATH2.337e-2434.9025.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN4.407e-2332.43Small heat shock protein, chloroplastic (Fragment)... [more]
HS21C_PEA4.407e-2336.00Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS21C_SOLLC1.418e-2135.63Small heat shock protein, chloroplastic OS=Solanum... [more]
HS22C_PETHY2.418e-2134.25Small heat shock protein, chloroplastic OS=Petunia... [more]
HS26P_ORYSJ2.503e-1830.0526.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS21C_WHEAT4.269e-1829.53Small heat shock protein, chloroplastic OS=Triticu... [more]
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Properties
Property NameValue
Genbank descriptionC01017F07SK Veg1 Citrus clementina cDNA clone C01017F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288184 ID=CX288184; Name=CX288184; organism=Citrus clementina; type=EST; length=713bp
GGCTGCACGAATTCGGCACGAGGGTTTTTTTTTTTTATCTATTACACAAA
CAGCTCAGATTCATACCGAAAATAATTTCAAAAACAAAGACAGAAAAGCA
AACACCACTTCGGAACCATTGGTCATATTATTGGACGTTGATATCCAAAA
TTCTACCATTATTATGACTAGGCTTAGGTATGGTTACATACAAAACCCCA
TCTTTAACCTCAGCTGTAATCTTGTCAAACTGAACATTCTCAGGCAATGC
AATCCTGCTGCTGTACCTCCCATAACTTTTAGCAGACCAGTCTCCTTCTT
CTTCATCAGCTTCGCCATTGCCATTATTATTATTACTGTTCACTTGGGTT
TCTTTCTTTTTGTTTTTGGGTACTTTTTGAGCTTTGACAACCAACATTTT
CTCTTCAACCCAGACCTTAACGTCTTGTTTAGTCATGCCGGGCATGTCAA
ATCTCATCGTGTACTCATTCTCCCCCTCTTTTATCTCCCACGGAGTTCTT
CCTCTGCTGTTAAACCCTCCTGTCTCGCTTGGCAAAGGCGATGGCCATGT
CCCCGAGTAAGCGAATGGCTCCTCCAACATCCTGTCCATTGTCTCCATCA
TCTGCTGCACTGTTCTTGCTGTAGGAAACCGGTCCCATAACCCTACTGGT
GGAACAGGGGCAACTCGTTTCTTGGATTGGGGCTGATGGTGCTTGCTGTT
GGCTCGTTGCAAT
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