CX288186

Overview
NameCX288186
Unique NameCX288186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length652
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSKP_SPIOL (Cysteine synthase, chloroplastic/chromoplastic OS=Spinacia oleracea GN=CYSK PE=1 SV=2)

HSP 1 Score: 223.016 bits (567), Expect = 1.047e-57
Identity = 108/133 (81.20%), Postives = 122/133 (91.73%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 407
            G GRYLKE+NP ++VIGIEP+ESNILSGGKPGPHKIQG+GAGFVP NLD GV+DEVIEVSS+EAVE+AKQLA++EGLLVGISSG      + +GKRPENAGKLIAVVFPSFGERYLSS+LFQSIREECENM+P
Sbjct:  250 GVGRYLKERNPGVQVIGIEPTESNILSGGKPGPHKIQGLGAGFVPSNLDLGVMDEVIEVSSEEAVEMAKQLAMKEGLLVGISSGAAAAAAVRIGKRPENAGKLIAVVFPSFGERYLSSILFQSIREECENMKP 382          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 1.974e-56
Identity = 104/133 (78.20%), Postives = 120/133 (90.23%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 407
            G GR+LKE+NPNIK+IG+EP+ESN+LSGGKPGPHKIQGIGAGF+P NLD+ V+DEVIE+SSDEAVE A+ LALQEGLLVGISSG      ++VGKRPENAGKLI VVFPS+GERYLSS+LFQSIREECE M+P
Sbjct:  252 GTGRFLKEQNPNIKIIGVEPTESNVLSGGKPGPHKIQGIGAGFIPGNLDQDVMDEVIEISSDEAVETARTLALQEGLLVGISSGAAALAAIQVGKRPENAGKLIGVVFPSYGERYLSSILFQSIREECEKMKP 384          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSKP_ARATH (Cysteine synthase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=OASB PE=1 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.259e-52
Identity = 99/133 (74.44%), Postives = 115/133 (86.47%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 407
            G GR++KE+ P +KVIG+EP+ES ILSGGKPGPHKIQGIGAGFVP+NLD  ++DE I +SS+EA+E +KQLALQEGLLVGISSG      ++V KRPENAGKLIAVVFPSFGERYLS+ LFQSIREECE MQP
Sbjct:  258 GVGRFIKERKPELKVIGVEPTESAILSGGKPGPHKIQGIGAGFVPKNLDLAIVDEYIAISSEEAIETSKQLALQEGLLVGISSGAAAAAAIQVAKRPENAGKLIAVVFPSFGERYLSTQLFQSIREECEQMQP 390          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSKM_ARATH (Cysteine synthase, mitochondrial OS=Arabidopsis thaliana GN=OASC PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 2.950e-52
Identity = 98/133 (73.68%), Postives = 117/133 (87.97%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 407
            G GR++KEKNP  +VIG+EP+ES+ILSGGKPGPHKIQGIGAGF+P+NLD+ ++DEVI +SS+EA+E AKQLAL+EGL+VGISSG      ++V KRPENAGKLIAVVFPSFGERYLS+ LFQSIREE E MQP
Sbjct:  296 GVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVVFPSFGERYLSTPLFQSIREEVEKMQP 428          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 1.049e-49
Identity = 99/133 (74.44%), Postives = 111/133 (83.46%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQP 407
            G GRYLKEKNPNIK+IG+EP+ESN+LSGGKPG          F+P NLD+ V+DEVIE+SSDEAVE AKQLALQEGLLVGISSG      ++V KRPENAGKLIAVVFPSFGERYLSS+LFQSIREECE M+P
Sbjct:  250 GTGRYLKEKNPNIKIIGVEPTESNVLSGGKPG----------FIPGNLDQDVMDEVIEISSDEAVETAKQLALQEGLLVGISSGAAALAAIQVAKRPENAGKLIAVVFPSFGERYLSSILFQSIREECEKMKP 372          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK2_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS3 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.584e-48
Identity = 93/131 (70.99%), Postives = 110/131 (83.97%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            G G+YLKE+NP IK+ G+EP+ES ILSGG+PGPHKIQGIGAGFVP  LD  +LDEV++VSSDEA+ +AKQLAL+EGLLVGISSG      + V +RPEN GKL+ VVFPSFGERYLSSVLF+SI+ E ENM
Sbjct:  191 GTGKYLKEQNPEIKIYGVEPTESAILSGGRPGPHKIQGIGAGFVPGVLDVNLLDEVVQVSSDEAISMAKQLALKEGLLVGISSGAAAVAAIRVAQRPENKGKLVVVVFPSFGERYLSSVLFESIKREAENM 321          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.757e-48
Identity = 93/131 (70.99%), Postives = 110/131 (83.97%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            GAG+YLKE+NPNIK+ G+EP ES ILSGGKPGPHKIQGIGAGF+P  LD  +LDEVI+VSS+E++E AK LAL+EGLLVGISSG      + + KRPENAGKLI  VFPSFGERYLS+VLF+S++ E ENM
Sbjct:  191 GAGKYLKEQNPNIKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLDVNLLDEVIQVSSEESIETAKLLALKEGLLVGISSGAAAAAAIRIAKRPENAGKLIVAVFPSFGERYLSTVLFESVKRETENM 321          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.820e-48
Identity = 89/131 (67.94%), Postives = 113/131 (86.26%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENM 401
            GAG+YLKE+NP++K+IG+EP ES +LSGGKPGPHKIQG+GAGF+P  LD  ++DEV+++SS+E++E+AK LAL+EGLLVGISSG      ++V KRPENAGKLI  VFPSFGERYLSSVLF S+R+E E+M
Sbjct:  191 GAGKYLKEQNPDVKLIGLEPVESAVLSGGKPGPHKIQGLGAGFIPGVLDVNIIDEVVQISSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVAVFPSFGERYLSSVLFDSVRKEAESM 321          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.675e-47
Identity = 89/135 (65.93%), Postives = 114/135 (84.44%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQPVP 413
            G+G+YL+E+NPN+K+ G+EP ES ILSGGKPGPHKIQGIGAGF+P  L+  ++D+V++VSS+E++E+AK LAL+EGLLVGISSG      ++V KRPENAGKLI V+FPSFGERYLSSVLF+++R E ENM   P
Sbjct:  191 GSGKYLREQNPNVKLYGVEPVESAILSGGKPGPHKIQGIGAGFIPGVLEVNLIDDVVQVSSEESIEMAKLLALKEGLLVGISSGAAAAAAIKVAKRPENAGKLIVVIFPSFGERYLSSVLFETVRREAENMTVEP 325          
BLAST of CX288186 vs. ExPASy Swiss-Prot
Match: CYSK_MAIZE (Cysteine synthase OS=Zea mays PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 2.188e-47
Identity = 92/135 (68.15%), Postives = 110/135 (81.48%), Query Frame = 3
Query:    9 GAGRYLKEKNPNIKVIGIEPSESNILSGGKPGPHKIQGIGAGFVPRNLDEGVLDEVIEVSSDEAVEIAKQLALQEGLLVGISSGXXXXXXMEVGKRPENAGKLIAVVFPSFGERYLSSVLFQSIREECENMQPVP 413
            G GRYL+E+NPN+K+ G+EP ES +L+GGKPGPHKIQGIGAGF+P  LD  +LDE ++VSSDEA+E AK LAL+EGLLVGISSG      + + KRPENAGKL  VVFPSFGERYLSSVLFQSI++E E+M   P
Sbjct:  191 GTGRYLREQNPNVKLYGVEPVESAVLNGGKPGPHKIQGIGAGFIPGVLDVDLLDETLQVSSDEAIETAKALALKEGLLVGISSGAAAAAAVRLAKRPENAGKLFVVVFPSFGERYLSSVLFQSIKKEAESMVVEP 325          
The following BLAST results are available for this feature:
BLAST of CX288186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CYSKP_SPIOL1.047e-5781.20Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_SOLTU1.974e-5678.20Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKP_ARATH2.259e-5274.44Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSKM_ARATH2.950e-5273.68Cysteine synthase, mitochondrial OS=Arabidopsis th... [more]
CYSKP_CAPAN1.049e-4974.44Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK2_ORYSJ2.584e-4870.99Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_CITLA5.757e-4870.99Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SPIOL9.820e-4867.94Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK_SOLTU1.675e-4765.93Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_MAIZE2.188e-4768.15Cysteine synthase OS=Zea mays PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC01017F09SK Veg1 Citrus clementina cDNA clone C01017F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288186 ID=CX288186; Name=CX288186; organism=Citrus clementina; type=EST; length=652bp
CGGCACGAGGAGCTGGTCGATATCTTAAAGAGAAAAACCCTAATATCAAG
GTTATTGGCATAGAGCCTTCCGAAAGCAATATACTTTCAGGTGGAAAGCC
TGGTCCGCACAAGATTCAAGGGATTGGAGCAGGTTTTGTTCCCAGGAATT
TGGATGAGGGTGTGCTTGATGAAGTCATTGAGGTATCTAGTGATGAAGCT
GTTGAAATTGCAAAGCAGTTAGCACTCCAGGAAGGCTTGCTGGTTGGCAT
ATCTTCTGGGGCGGCAGCTGCTGCAGCAATGGAGGTTGGGAAGAGACCTG
AGAATGCTGGAAAGCTTATTGCAGTTGTGTTTCCGAGCTTTGGAGAACGA
TATCTCTCATCCGTTCTTTTCCAGTCAATCCGCGAAGAATGTGAGAACAT
GCAGCCTGTGCCGTGAAATTCAACTCTTCGAGATTTATTGAAAATGCAAA
GCTTATTTTTCTGTCTTTCATAGACATTGTCATACATTTTGCTTTTGTTT
TAGTCAATATTTTCTGTTTTTGTGTACATCCACTAGTAGGATCCTAATTA
TAGTTATGTCCATTCATGACTGTTAAGTCCTTTTTTAAGAAGGAAAATCC
TGTTATTTGTGGAATTCATCTTAGGGGTGGAATTTGTGATTACATTTCTC
CT
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