CX288196

Overview
NameCX288196
Unique NameCX288196
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length653
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.452e-23
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            MT   VNPKAYPLAD+ LT T+LDLVQQAANYKQL KGANEATKTLNRGI+EFIVMAAD EPLE
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.883e-22
Identity = 53/64 (82.81%), Postives = 57/64 (89.06%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            MT   VNPKAYPLAD+ LT T+LDLVQQ+ANYKQL KGANEATKTLNRGI+EFIVMAAD EPLE
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL KGANEATKTLNRGISEFIVMAAD EPLE
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL KGANEATKTLNRGISEFIVMAAD EPLE
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL KGANEATKTLNRGISEFIVMAAD EPLE
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL KGANEATKTLNRGISEFIVMAAD EPLE
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 103.219 bits (256), Expect = 1.220e-21
Identity = 52/64 (81.25%), Postives = 56/64 (87.50%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL KGANEATKTLNRGISEFIVMAAD EPLE
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.082e-21
Identity = 51/60 (85.00%), Postives = 56/60 (93.33%), Query Frame = 2
Query:  473 AVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            +VNPKA+PLADS LT  ILDLVQQA++YKQL KGANEATKTLNRGISEFIVMAADTEP+E
Sbjct:    2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIE 61          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.033e-20
Identity = 49/64 (76.56%), Postives = 55/64 (85.94%), Query Frame = 2
Query:  461 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            M  + VNPKA+PLAD+NL+  ++DLVQQA NYKQL KGANEATKTLNRGISE IVMAAD EPLE
Sbjct:    1 MADDGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLE 64          
BLAST of CX288196 vs. ExPASy Swiss-Prot
Match: SNU13_USTMA (13 kDa ribonucleoprotein-associated protein OS=Ustilago maydis GN=SNU13 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.949e-19
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 2
Query:  473 AVNPKAYPLADSNLTITILDLVQQAANYKQLXKGANEATKTLNRGISEFIVMAADTEPLE 652
            A NPKA+PLAD+ LT  ILDL+QQA++YKQL KGANEATKTLNRGI EFIVMAAD EP+E
Sbjct:    3 APNPKAFPLADATLTNQILDLIQQASHYKQLKKGANEATKTLNRGICEFIVMAADVEPIE 62          
The following BLAST results are available for this feature:
BLAST of CX288196 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
NH2L1_XENTR8.452e-2384.38NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_XENLA1.883e-2282.81NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
NH2L1_RAT1.220e-2181.25NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE1.220e-2181.25NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA1.220e-2181.25NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN1.220e-2181.25NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_BOVIN1.220e-2181.25NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_SCHPO2.082e-2185.0013 kDa ribonucleoprotein-associated protein OS=Sch... [more]
NH2L1_CAEEL1.033e-2076.56NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
SNU13_USTMA1.949e-1978.3313 kDa ribonucleoprotein-associated protein OS=Ust... [more]

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Properties
Property NameValue
Genbank descriptionC01017G08SK Veg1 Citrus clementina cDNA clone C01017G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288196 ID=CX288196; Name=CX288196; organism=Citrus clementina; type=EST; length=653bp
GGGTTGGACATACTAGCTTGGTGGCGTGGCAATGCTCCATTCTATCCGAC
CCTCGCAAGAATGGCTCGTGATTACTTAGCATTAGAAGAACCTTTTAATG
ATGAGTTTGACGAGGGTGCCTTGATTGACCTGCTGTGCGACATAGACCAT
ATGAATTATAAATTTAAATTTTGTGACTTATCCGAGATAATAACGCCTTT
ACTATTGTTAAAAGGATTTTTTAATAGCGCTGAAAATTAGCGGTTATTTG
TGACTGCGTTTGCATTTGTACAACATTATTCCTATTTGTATTATACATAC
GGTAAATGTTCTCTACATCATATAGTTTGTAAAATATCTCATTAGTACAT
CTTTGCTTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACC
TCGTGCCGAATTCGGCACGAGGCCACAAAAACCCTAGCCTCCGTCCCCGC
CACCACGAAAATGACAGGAGAAGCAGTGAACCCTAAAGCTTACCCGCTAG
CAGATTCTAATCTCACAATCACGATACTGGATCTCGTTCAGCAAGCTGCC
AATTACAAGCAGCTCANAAAGGGCGCCAATGAAGCTACTAAGACTCTTAA
CAGAGGTATCTCCGAGTTTATTGTGATGGCTGCTGATACCGAGCCTCTGG
AGA
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