CX288197

Overview
NameCX288197
Unique NameCX288197
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length178
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.179e-16
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK
Sbjct:  236 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_POPTR (50S ribosomal protein L2, chloroplastic OS=Populus trichocarpa GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_MORIN (50S ribosomal protein L2, chloroplastic OS=Morus indica GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_MANES (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  239 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 277          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_GOSHI (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CUCSA (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_CARPA (50S ribosomal protein L2, chloroplastic OS=Carica papaya GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2B_POPAL (50S ribosomal protein L2-B, chloroplastic OS=Populus alba GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2A_POPAL (50S ribosomal protein L2-A, chloroplastic OS=Populus alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+PATPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  237 RAPIGRKKPATPWGYPALGRRSRKRNKYSDNLILRRRSK 275          
BLAST of CX288197 vs. ExPASy Swiss-Prot
Match: RK2_VITVI (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 2
Query:    2 RAPIGRKRPATPWGYPALGRRSRKRNKYSDNLILRRRTK 118
            RAPIGRK+P TPWGYPALGRRSRKRNKYSDNLILRRR+K
Sbjct:  236 RAPIGRKKPTTPWGYPALGRRSRKRNKYSDNLILRRRSK 274          
The following BLAST results are available for this feature:
BLAST of CX288197 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
RK2_CITSI1.179e-16100.0050S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_POPTR7.644e-1694.8750S ribosomal protein L2, chloroplastic OS=Populus... [more]
RK2_MORIN7.644e-1694.8750S ribosomal protein L2, chloroplastic OS=Morus i... [more]
RK2_MANES7.644e-1694.8750S ribosomal protein L2, chloroplastic OS=Manihot... [more]
RK2_GOSHI7.644e-1694.8750S ribosomal protein L2, chloroplastic OS=Gossypi... [more]
RK2_CUCSA7.644e-1694.8750S ribosomal protein L2, chloroplastic OS=Cucumis... [more]
RK2_CARPA7.644e-1694.8750S ribosomal protein L2, chloroplastic OS=Carica ... [more]
RK2B_POPAL7.644e-1694.8750S ribosomal protein L2-B, chloroplastic OS=Popul... [more]
RK2A_POPAL7.644e-1694.8750S ribosomal protein L2-A, chloroplastic OS=Popul... [more]
RK2_VITVI2.224e-1592.3150S ribosomal protein L2, chloroplastic OS=Vitis v... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01017G09SK Veg1 Citrus clementina cDNA clone C01017G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288197 ID=CX288197; Name=CX288197; organism=Citrus clementina; type=EST; length=178bp
AAGGGCTCCGATTGGTAGAAAAAGACCCGCAACCCCTTGGGGTTATCCTG
CACTTGGAAGACGAAGTAGAAAAAGGAATAAATATAGTGATAATTTGATT
CTTCGCCGCCGTACTAAATAGGAGAGAAAATCGAATTTTTTTCTTCGTTT
TTACAATTTACAAAAAAAAAAAAAAAAA
back to top