CX288210

Overview
NameCX288210
Unique NameCX288210
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length699
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288210_ssr72 microsatellite CX288210_ssr72:72..81. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10204 contig Ccv1_Contig10204:10..708. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: THOC4_TAEGU (THO complex subunit 4 OS=Taeniopygia guttata GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 71/138 (51.45%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  255 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 668
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN G
Sbjct:   67 GRNRPAPYSRPKQLPEKWQHDLFD---SGF-----GAGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRG 195          
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: THOC4_BOVIN (THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.287e-31
Identity = 75/158 (47.47%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  255 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVN------------FGNSNGVPRG 692
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA +VN            FG   G  RG
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSVNRGGMTRNRGSGGFGGGGGTRRG 218          
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: THOC4_MOUSE (THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=1 SV=3)

HSP 1 Score: 133.265 bits (334), Expect = 1.243e-30
Identity = 70/138 (50.72%), Postives = 95/138 (68.84%), Query Frame = 3
Query:  255 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFG 668
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I T+   PA ++N G
Sbjct:   69 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDTQ-RRPAQSINRG 197          
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: REFP2_MOUSE (RNA and export factor-binding protein 2 OS=Mus musculus GN=Refbp2 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.243e-30
Identity = 79/187 (42.25%), Postives = 105/187 (56.15%), Query Frame = 3
Query:  129 MSSALDMSLDDIIKNNKKXXXXXXXXXXXXXXXXXXXXXXNRGANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPR 689
            M+  +DMSLDDIIK N+                         G NR APY+  K     WQHD+F            G    +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++ YDRSGRS GTA+V + RRADA+ A+K+Y  V LDG+PM I++V + I  +   PA +   GN  G+ R
Sbjct:    1 MADKMDMSLDDIIKLNRNQRRVNRGGGPRRNRPAIARG----GRNRPAPYSRPKPLPDKWQHDLFDSG--------CGGGEGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQIDPQ-RRPAQS---GNRGGMTR 171          
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: THOC4_HUMAN (THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=1 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 2.769e-30
Identity = 74/158 (46.84%), Postives = 98/158 (62.03%), Query Frame = 3
Query:  255 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVN------------FGNSNGVPRG 692
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   PA +VN            FG   G  RG
Sbjct:   70 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GGGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIDAQ-RRPAQSVNRGGMTRNRGAGGFGGGGGTRRG 218          
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: THOC4_XENTR (THO complex subunit 4 OS=Xenopus tropicalis GN=thoc4 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.616e-30
Identity = 71/147 (48.30%), Postives = 96/147 (65.31%), Query Frame = 3
Query:  255 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 695
            G NR APY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   P  + + G     PRGG
Sbjct:   73 GRNRPAPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGITRPRGG 210          
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: THO4A_XENLA (THO complex subunit 4-A OS=Xenopus laevis GN=thoc4-A PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 70/147 (47.62%), Postives = 95/147 (64.63%), Query Frame = 3
Query:  255 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 695
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+PM I++V + I  +   P  + + G     PRGG
Sbjct:   70 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GAGAGMETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVTSQIEAQ-RRPIQSQSRGGGVTRPRGG 207          
BLAST of CX288210 vs. ExPASy Swiss-Prot
Match: THO4B_XENLA (THO complex subunit 4-B OS=Xenopus laevis GN=thoc4-B PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = 3
Query:  255 GANRVAPYTTAKAPETTWQHDMFADQVSAFPVQQAGRASAIETGTKLYISNLDYGVSNEDIKELFSEVGDLKRYSIHYDRSGRSKGTAEVVYSRRADAVAAVKRYNNVQLDGKPMKIEIVGTNIATRTAAPAANVNFGNSNGVPRGG 695
            G NR  PY+  K     WQHD+F    S F     G  + +ETG KL +SNLD+GVS+ DI+ELF+E G LK+ ++HYDRSGRS GTA+V + R+ADA+ A+K+YN V LDG+ M I++V + I  +   P  + + G     PRGG
Sbjct:   69 GRNRPTPYSRPKQLPDKWQHDLFD---SGF-----GTGAGMETGGKLLVSNLDFGVSDADIQELFAEFGSLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRSMNIQLVTSQIEAQ-RRPIQSQSRGGGVARPRGG 206          
The following BLAST results are available for this feature:
BLAST of CX288210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
THOC4_TAEGU7.287e-3151.45THO complex subunit 4 OS=Taeniopygia guttata GN=TH... [more]
THOC4_BOVIN7.287e-3147.47THO complex subunit 4 OS=Bos taurus GN=THOC4 PE=2 ... [more]
THOC4_MOUSE1.243e-3050.72THO complex subunit 4 OS=Mus musculus GN=Thoc4 PE=... [more]
REFP2_MOUSE1.243e-3042.25RNA and export factor-binding protein 2 OS=Mus mus... [more]
THOC4_HUMAN2.769e-3046.84THO complex subunit 4 OS=Homo sapiens GN=THOC4 PE=... [more]
THOC4_XENTR3.616e-3048.30THO complex subunit 4 OS=Xenopus tropicalis GN=tho... [more]
THO4A_XENLA1.052e-2947.62THO complex subunit 4-A OS=Xenopus laevis GN=thoc4... [more]
THO4B_XENLA3.998e-2946.94THO complex subunit 4-B OS=Xenopus laevis GN=thoc4... [more]
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Properties
Property NameValue
Genbank descriptionC01017H11SK Veg1 Citrus clementina cDNA clone C01017H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288210 ID=CX288210; Name=CX288210; organism=Citrus clementina; type=EST; length=699bp
GAATTCGGCACGAGGGGGAAACCCTAAATTTCCTCCTCAGCCTTCCTCTC
TTTCTACTTTTCCTCTTAATTTCTCTCTCTCTTATTACGATTTTATCTTT
GATTTTCTATTTTCTGTTATAGTAAAAAATGTCAAGCGCTTTAGATATGT
CTCTTGACGATATCATCAAGAACAACAAAAAGTCTGGATCTGGCAACTTC
CGGGGCCGGGGTCGAGGATCCGGACCCGGCCCTGCTCGTCGCATCCCCAA
TCGTGGTGCAAACCGTGTGGCGCCGTATACCACCGCCAAAGCGCCGGAGA
CGACGTGGCAGCACGATATGTTTGCAGATCAGGTGAGTGCTTTCCCGGTA
CAGCAGGCGGGGCGGGCTTCAGCTATAGAGACTGGAACGAAGCTGTACAT
ATCAAATCTGGATTACGGTGTCTCTAATGAAGACATCAAGGAACTGTTTT
CTGAAGTTGGTGACTTGAAGCGGTACTCAATCCATTATGATAGAAGTGGG
AGATCAAAGGGAACGGCAGAGGTTGTCTATTCACGACGAGCAGATGCTGT
GGCTGCAGTCAAGAGATACAACAATGTGCAGCTTGATGGGAAGCCGATGA
AAATTGAGATTGTGGGAACAAACATTGCAACCCGTACTGCAGCTCCAGCT
GCTAATGTCAACTTTGGAAATTCAAATGGTGTTCCTAGAGGTGGACAAG
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