CX288215

Overview
NameCX288215
Unique NameCX288215
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig910 contig Ccv1_Contig910:40..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288215 vs. ExPASy Swiss-Prot
Match: UMP6_ARATH (Uncharacterized protein At1g47420, mitochondrial OS=Arabidopsis thaliana GN=At1g47420 PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 116/172 (67.44%), Postives = 140/172 (81.40%), Query Frame = 1 
Query:  202 DCRSSLVMSIGCNRSFSEDVAHMPVIRDPEIQRAFKDLMAADWGELPASVIHDAKSALSRNNDDKAGQEVLKNVFSAAEAVEEFIGIIMNIKMEFDDEIGLSGENVKPLSNELSSAIRTVYQRYATYLDAFGPDESYLRKKVETELGSKMIFLKMRCAGLGSEWGKVTVLGT 717
            D +    M +G  R FSEDV+HMP + D ++  AFKDLMAADW ELP++V+ DAK+A+S+N DDKAGQE LKNVF AAEAVEEF GI+ +IKME DD IG+SGE VKPL N+++ A+RT YQRYA YLD+F P+E YL+KKVE ELG+KMI LKMRC+GLGSEWGKVTVLGT
Sbjct:   74 DLQYPRAMGMGQVRRFSEDVSHMPEMEDSDVLNAFKDLMAADWAELPSAVVKDAKTAISKNTDDKAGQEALKNVFRAAEAVEEFGGILTSIKMEIDDSIGMSGEGVKPLPNDITDALRTAYQRYAEYLDSFEPEEVYLKKKVEMELGTKMIHLKMRCSGLGSEWGKVTVLGT 245
The following BLAST results are available for this feature:
BLAST of CX288215 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
UMP6_ARATH7.552e-6367.44Uncharacterized protein At1g47420, mitochondrial O... [more]
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Properties
Property NameValue
Genbank descriptionC01018A05SK Veg1 Citrus clementina cDNA clone C01018A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288215 ID=CX288215; Name=CX288215; organism=Citrus clementina; type=EST; length=717bp
GATTTTCGCATCACCACCGCAGCGAGAGAAATGGAGAAGATAGCAGTAAT
GAGTGTCAGATCCATACGGCAAGCAGCGTGCGTCAGATCTTCACTAATAG
CCGCCGCCAACAACCATCATCTCCGCCACTTGTCGTCTTCTCGATCGCTC
TTCAGTTTATCTTCACCTGCTGCTTCGATTCCTTCCAAATCCATCCCTTT
TGATTGCAGGTCTTCTCTTGTGATGAGCATAGGATGCAACCGTTCTTTCA
GTGAAGATGTTGCTCACATGCCTGTAATAAGAGACCCTGAAATTCAGCGT
GCTTTCAAGGACTTGATGGCTGCAGACTGGGGTGAGCTTCCTGCTTCTGT
CATCCATGATGCAAAGAGTGCGTTGTCCAGAAATAATGATGACAAGGCTG
GCCAGGAGGTCTTGAAAAATGTTTTCAGTGCTGCTGAAGCAGTTGAGGAA
TTCATTGGGATTATTATGAACATTAAAATGGAATTTGATGATGAAATTGG
GCTAAGTGGTGAGAATGTAAAACCCTTGTCAAATGAATTATCCTCTGCAA
TTCGTACAGTTTATCAACGTTATGCTACCTACTTGGATGCATTTGGCCCT
GATGAATCCTATCTGCGGAAGAAGGTAGAAACAGAGTTGGGTTCAAAGAT
GATTTTCCTAAAGATGAGATGTGCCGGCCTTGGTTCTGAGTGGGGAAAGG
TTACTGTTCTTGGAACC
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