CX288219

Overview
NameCX288219
Unique NameCX288219
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length789
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13873 contig Ccv1_Contig13873:70..860. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288219 vs. ExPASy Swiss-Prot
Match: PGES2_DANRE (Prostaglandin E synthase 2 OS=Danio rerio GN=ptges2 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.212e-35
Identity = 85/201 (42.29%), Postives = 112/201 (55.72%), Query Frame = 1
Query:  253 KEQPRSQKFSDV--VLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDGE-QMVDSSDIM--------------------------------------DKLFQRIH------LDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSK 714
            KE   S   +D+   LYQY+ CPFC+KV+AFLDY+R+PY++VEVNP+ ++EIKWS Y+KVPIL V+G  Q+ DSS I+                                      +K +  +H      L        EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E   AKY GAAAM+ +SK
Sbjct:   94 KESDASDLDTDLKLTLYQYKTCPFCSKVRAFLDYHRLPYEIVEVNPVMRQEIKWSTYRKVPILMVNGTVQLNDSSVIISALKTYISSKDKKISEILACYPEMKSKNDRGKDVIEFGNKYWVMVHDADADQLYPGKDSRKEEIKWRTWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGSFEGFFAKYFGAAAMWIISK 294          
BLAST of CX288219 vs. ExPASy Swiss-Prot
Match: PGES2_MOUSE (Prostaglandin E synthase 2 OS=Mus musculus GN=Ptges2 PE=1 SV=2)

HSP 1 Score: 142.895 bits (359), Expect = 1.935e-33
Identity = 83/206 (40.29%), Postives = 110/206 (53.40%), Query Frame = 1
Query:  238 AKPQAKEQPRSQKFSDVVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVDG----EQMVDSSDIMDKLFQRI-----------------------------------HLDNASSQS--------DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSK 714
            A+  A + P S     + LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL        +Q+ DSS I+  L   +                                    LD   +Q          EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E  +AKY GAAAMY +SK
Sbjct:   86 AERSAAQLPLSNSLQ-LTLYQYKTCPFCSKVRAFLDFHSLPYQVVEVNPVRRTEIKFSSYRKVPILVAQEGDSLQQLNDSSVIISALKTYLVSGQPLEEVITYYPPMKAMNDQGKEVTEFCNKYWPMLDEKEAQQMYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPAEALASFDYIVREGKFGAVEAAMAKYVGAAAMYLISK 290          
BLAST of CX288219 vs. ExPASy Swiss-Prot
Match: PGES2_MACFA (Prostaglandin E synthase 2 OS=Macaca fascicularis GN=PTGES2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 78/192 (40.62%), Postives = 105/192 (54.69%), Query Frame = 1
Query:  286 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVD----GEQMVDSSDIM---------------------------------------------DKLFQRIHLDNASSQSDEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSK 714
            + LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL        +Q+ DSS I+                                             +K  Q+++  +      EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E  VAKY GAAAMY +SK
Sbjct:  102 LTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVLRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNDQGKEVTEFGNKYWLMLNEKEAQQVY--SGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISK 291          
BLAST of CX288219 vs. ExPASy Swiss-Prot
Match: PGES2_HUMAN (Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGES2 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.352e-33
Identity = 79/190 (41.58%), Postives = 104/190 (54.74%), Query Frame = 1
Query:  286 VVLYQYEACPFCNKVKAFLDYYRIPYKVVEVNPISKKEIKWSDYKKVPILKVD----GEQMVDSSDIMDKLFQRI-----------------------------------HLDNASSQS--------DEEKKWRAWVDNHLVHVLSPNIYRTTSEALESFDYITTQGNFSFTEKLVAKYAGAAAMYFVSK 714
            + LYQY+ CPFC+KV+AFLD++ +PY+VVEVNP+ + EIK+S Y+KVPIL        +Q+ DSS I+  L   +                                    L+   +Q          EE KWR W D+ LVH++SPN+YRT +EAL SFDYI  +G F   E  VAKY GAAAMY +SK
Sbjct:  102 LTLYQYKTCPFCSKVRAFLDFHALPYQVVEVNPVRRAEIKFSSYRKVPILVAQEGESSQQLNDSSVIISALKTYLVSGQPLEEIITYYPAMKAVNEQGKEVTEFGNKYWLMLNEKEAQQVYGGKEARTEEMKWRQWADDWLVHLISPNVYRTPTEALASFDYIVREGKFGAVEGAVAKYMGAAAMYLISK 291          
The following BLAST results are available for this feature:
BLAST of CX288219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PGES2_DANRE1.212e-3542.29Prostaglandin E synthase 2 OS=Danio rerio GN=ptges... [more]
PGES2_MOUSE1.935e-3340.29Prostaglandin E synthase 2 OS=Mus musculus GN=Ptge... [more]
PGES2_MACFA7.352e-3340.63Prostaglandin E synthase 2 OS=Macaca fascicularis ... [more]
PGES2_HUMAN7.352e-3341.58Prostaglandin E synthase 2 OS=Homo sapiens GN=PTGE... [more]
back to top
Properties
Property NameValue
Genbank descriptionC01018A09SK Veg1 Citrus clementina cDNA clone C01018A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288219 ID=CX288219; Name=CX288219; organism=Citrus clementina; type=EST; length=789bp
AATTCGGCACGAGGATTTAACCGACTCGCCACCCTTAGCCGAGCCGTTTC
TAGCGGCGCCACCTCAGCAGCCACTCAACATCGTCATCATCAGCTGGCTC
AACCGGCGGCTCTCTTCAGCACATTCTCATCTTGTCAATCTCAAGGTTTC
GCGCAAAAGATCGTCAATCGGCTTGGCCCGTCTTTTGCTGGCGGAGTTGC
GGGGTTCTCTGCGGCTGCCCCTTCACTAGCTCAAGACGCTAAGCCTCAGG
CTAAGGAGCAGCCTCGGTCTCAGAAGTTTAGCGACGTCGTTCTCTATCAG
TATGAAGCTTGTCCTTTCTGCAACAAAGTTAAAGCATTTTTGGATTATTA
TAGGATTCCTTACAAAGTTGTGGAGGTCAATCCTATCAGCAAAAAAGAGA
TTAAGTGGTCTGATTATAAGAAGGTGCCCATACTGAAGGTTGATGGTGAA
CAGATGGTGGATTCCTCAGATATAATGGATAAGCTGTTCCAAAGGATTCA
TCTTGACAATGCTTCCTCTCAAAGCGATGAGGAGAAGAAGTGGCGTGCGT
GGGTGGATAATCACTTGGTGCATGTTTTGTCTCCGAACATATATCGAACC
ACTTCTGAAGCACTTGAGTCATTTGACTATATCACCACTCAAGGCAACTT
CAGTTTCACTGAGAAGTTAGTGGCGAAGTATGCTGGAGCAGCTGCAATGT
ATTTTGTGTCTAAGAACTGAAGAAGAGACACATATCACTGATGAACGAGC
GTCATTGTATGAAGCTGTGGAATATGGGTGGATGCTTTG
back to top