CX288223

Overview
NameCX288223
Unique NameCX288223
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length377
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9629 contig Ccv1_Contig9629:356..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.254e-20
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK+GKGKG+IGSASQEF
Sbjct:   91 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.405e-19
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF
Sbjct:   94 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.405e-19
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF
Sbjct:   94 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.917e-18
Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELSKLLG+VTIANGGVLPNIHQ LLPKK GK KG+IGSASQEF
Sbjct:   90 AVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   90 AVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17
Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF
Sbjct:   90 AVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   90 AVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183
            AVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF
Sbjct:   90 AVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12
Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GKG      ASQE
Sbjct:   86 AIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG----DKASQE 129          
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3)

HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11
Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 1
Query:   37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180
            A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK  G   +ASQE
Sbjct:   89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTAGG-KNASQE 135          
The following BLAST results are available for this feature:
BLAST of CX288223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
H2AX_CICAR5.254e-2095.92Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1[more]
H2AXB_ARATH3.405e-1993.88Probable histone H2AXb OS=Arabidopsis thaliana GN=... [more]
H2AXA_ARATH3.405e-1993.88Probable histone H2AXa OS=Arabidopsis thaliana GN=... [more]
H2AX_PICAB4.917e-1889.80Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AXB_ORYSJ7.101e-1787.76Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI7.101e-1787.76Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2AXA_ORYSJ5.089e-1585.71Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI5.089e-1585.71Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2A2_PICGU6.878e-1275.00Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=... [more]
H2A_MAGGR1.173e-1175.00Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC01018B01SK Veg1 Citrus clementina cDNA clone C01018B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288223 ID=CX288223; Name=CX288223; organism=Citrus clementina; type=EST; length=377bp
AATCGGCACGAGGCCTCGTGCCGAATCGGCACGAGGGCAGTTCGAAATGA
TGAGGAATTGAGCAAGCTGCTGGGCTCGGTTACCATTGCCAATGGAGGTG
TTTTACCCAACATTCACCAGACGCTGCTTCCCAAGAAGATGGGGAAAGGA
AAGGGTGACATTGGTTCTGCTTCTCAAGAGTTCTAGACTCTGCTCTGTCA
GAATTTTACTAGTATCTGTAAAAAAGGACAAAAAGAAAAATGGTTATGAG
TTTTTTTCTTATGGTAACAGAGATTGCATTTGCTAATCTTTAACTATGTG
TAACTTGATGAGATTATTCCATTGCTTTCCACATGTTATTTGTTATTGAA
CAATAAAAAAAAAAAAAAAAAAAAAAA
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