CX288223
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AX_CICAR (Histone H2AX OS=Cicer arietinum GN=HIS2A PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.254e-20 Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKK+GKGKG+IGSASQEF Sbjct: 91 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKVGKGKGEIGSASQEF 139
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXB_ARATH (Probable histone H2AXb OS=Arabidopsis thaliana GN=At1g54690 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.405e-19 Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF Sbjct: 94 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXA_ARATH (Probable histone H2AXa OS=Arabidopsis thaliana GN=At1g08880 PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 3.405e-19 Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLP K+GK KGDIGSASQEF Sbjct: 94 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPSKVGKNKGDIGSASQEF 142
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 4.917e-18 Identity = 44/49 (89.80%), Postives = 46/49 (93.88%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELSKLLG+VTIANGGVLPNIHQ LLPKK GK KG+IGSASQEF Sbjct: 90 AVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKSGKDKGEIGSASQEF 138
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17 Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF Sbjct: 90 AVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17 Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELS+LLG+VTIA GGVLPNIHQTLLPKK GK K DIGSASQEF Sbjct: 90 AVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKKGGKDKADIGSASQEF 138
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15 Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF Sbjct: 90 AVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 5.089e-15 Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQEF 183 AVRNDEELS+LLG+VTIA GGVLPNI Q LLPKK G GKGDIGSASQEF Sbjct: 90 AVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK-GGGKGDIGSASQEF 137
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A2_PICGU (Histone H2A.2 OS=Pichia guilliermondii GN=HTA2 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 6.878e-12 Identity = 36/48 (75.00%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180 A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GKG ASQE Sbjct: 86 AIRNDEELNKLLGDVTIAQGGVLPNIHQNLLPKKSGKG----DKASQE 129
BLAST of CX288223 vs. ExPASy Swiss-Prot
Match: H2A_MAGGR (Histone H2A OS=Magnaporthe grisea GN=HTA1 PE=2 SV=3) HSP 1 Score: 68.5514 bits (166), Expect = 1.173e-11 Identity = 36/48 (75.00%), Postives = 39/48 (81.25%), Query Frame = 1 Query: 37 AVRNDEELSKLLGSVTIANGGVLPNIHQTLLPKKMGKGKGDIGSASQE 180 A+RNDEEL+KLLG VTIA GGVLPNIHQ LLPKK GK G +ASQE Sbjct: 89 AIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKTGKTAGG-KNASQE 135 The following BLAST results are available for this feature:
BLAST of CX288223 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 31
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288223 ID=CX288223; Name=CX288223; organism=Citrus clementina; type=EST; length=377bpback to top |