CX288226

Overview
NameCX288226
Unique NameCX288226
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288226_ssr92 microsatellite CX288226_ssr92:92..101. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig30 contig Ccv1_Contig30:664..1327. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP_CUCSA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Cucumis sativus GN=PSBP PE=2 SV=1)

HSP 1 Score: 310.457 bits (794), Expect = 5.108e-84
Identity = 152/178 (85.39%), Postives = 161/178 (90.45%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPK+NTD+LPY+GDGFKLSIPSKWNPSKEREFPGQVLRYEDNFD NSN+SVII PTDKKSI D+GSPEEFLSKVDYLLGKQAY GKT+SEGGFDPDAVATANILEA+        YYF+SVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKG RK+VE  ASSFSVA
Sbjct:   86 FGKPKSNTDYLPYSGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDSNSNLSVIINPTDKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVATANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGARKFVEGAASSFSVA 263          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP1_ARATH (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Arabidopsis thaliana GN=PSBP1 PE=1 SV=2)

HSP 1 Score: 301.597 bits (771), Expect = 2.373e-81
Identity = 144/178 (80.90%), Postives = 163/178 (91.57%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPKTNTDFLPYNGDGFK+ +P+KWNPSKE E+PGQVLR+EDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE+S +     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKG RK+VES A+SFSVA
Sbjct:   86 FGKPKTNTDFLPYNGDGFKVQVPAKWNPSKEIEYPGQVLRFEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGARKFVESAATSFSVA 263          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP_SOLTU (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum tuberosum GN=PSBP PE=2 SV=1)

HSP 1 Score: 295.819 bits (756), Expect = 1.302e-79
Identity = 144/178 (80.90%), Postives = 155/178 (87.08%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPK NTDFLPYNGDGFKL IP+KWNPSKE EFPGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVATAN+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKG +K+VE+ A+SFS+A
Sbjct:   83 FGKPKENTDFLPYNGDGFKLQIPAKWNPSKEIEFPGQVLRYEDNFDSTSNLMVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATANLLEASSATVGGKQYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 260          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP_PEA (Oxygen-evolving enhancer protein 2, chloroplastic OS=Pisum sativum GN=PSBP PE=1 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.221e-79
Identity = 145/178 (81.46%), Postives = 156/178 (87.64%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGK KTNTD+LPYNGDGFKL +P+KWNPSKEREFPGQVLRYEDNFD  SNVSV++  TDKKSITDYGSPEEFLSKVDYLLGKQA+ G+T SEGGFD +AVA ANILE+S        YY +SVLTRTADGDEGGKHQLITATVK GKLYICKAQAGDKRWFKG RK+VE TASSFSVA
Sbjct:   82 FGKAKTNTDYLPYNGDGFKLLVPAKWNPSKEREFPGQVLRYEDNFDATSNVSVLVQTTDKKSITDYGSPEEFLSKVDYLLGKQAFFGQTDSEGGFDTNAVAVANILESSAPVIGGKQYYNISVLTRTADGDEGGKHQLITATVKDGKLYICKAQAGDKRWFKGARKFVEDTASSFSVA 259          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP_SOLLC (Oxygen-evolving enhancer protein 2, chloroplastic OS=Solanum lycopersicum GN=PSBP PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.880e-78
Identity = 141/178 (79.21%), Postives = 154/178 (86.52%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPK NTDFLPYNGDGFKL +P+KWNPSKE E+PGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFLSKVDYLLGKQAY GKT SEGGF+  AVAT N+LEAS        YY+LSVLTRTADGDEGGKHQLITATV  GKLYICKAQAGDKRWFKG +K+VE+ A+SFS+A
Sbjct:   81 FGKPKENTDFLPYNGDGFKLQVPAKWNPSKEVEYPGQVLRYEDNFDSTSNLIVAVTPTDKKSITDYGSPEEFLSKVDYLLGKQAYFGKTDSEGGFESGAVATRNLLEASSATVGGKEYYYLSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENAATSFSIA 258          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP_SINAL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Sinapis alba GN=PSBP PE=2 SV=2)

HSP 1 Score: 288.115 bits (736), Expect = 2.715e-77
Identity = 136/178 (76.40%), Postives = 158/178 (88.76%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPK NTDF  Y+GDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+SEGGFD +AVATANILE +++     PYY+LSVLTRTADGDEGGKHQLITATV GGKLYICKAQAGDKRWFKG  K+VE  A+SFSVA
Sbjct:   83 FGKPKKNTDFTAYSGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKGANKFVEKAATSFSVA 260          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 2.715e-77
Identity = 141/178 (79.21%), Postives = 153/178 (85.96%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGK KTNTDFLPY GDGF L IP+KWNPSKE EFPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEGGFDPD+VATANILE S        YY +SVLTRTADGDEGGKH +I+ATV  GKLYICKAQAGDKRWFKG +K+VEST +SF+VA
Sbjct:   87 FGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEGGFDPDSVATANILEVSTPVVGGKQYYNISVLTRTADGDEGGKHHVISATVTDGKLYICKAQAGDKRWFKGAKKFVESTTTSFNVA 264          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP2_TOBAC (Oxygen-evolving enhancer protein 2-2, chloroplastic OS=Nicotiana tabacum GN=PSBP2 PE=1 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 3.546e-77
Identity = 139/178 (78.09%), Postives = 156/178 (87.64%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPKT+TDF  YNGDGFKL IPSKWNP+KE E+PGQVLR+EDNFD  SNV V ITPTDKKSITD+GSPE+FLS+VDYLLG+QAYSGKT SEGGF+ DAVA AN+LE S       PYY+LSVLTRTADG+EGGKHQLITATV  GKLYICKAQAGDKRWFKG +K+VE+TA+SFS+A
Sbjct:   88 FGKPKTDTDFQTYNGDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEGGFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKAQAGDKRWFKGAKKFVENTATSFSLA 265          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP1_TOBAC (Oxygen-evolving enhancer protein 2-1, chloroplastic OS=Nicotiana tabacum GN=PSBP1 PE=3 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 3.546e-77
Identity = 140/178 (78.65%), Postives = 153/178 (85.96%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASVR----PPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPK NTDFL YNGDGFKL +P+KWNPSKE EFPGQVLRYEDNFD  SN+ V +TPTDKKSITDYGSPEEFL++VD+LLGKQAY GKT SEGGF+  AVATAN+LE S        YY LSVLTRTADGDEGGKHQLI+ATV GGKLYICKAQAGDKRWFKG RK+VE+ A+SFSVA
Sbjct:   91 FGKPKENTDFLAYNGDGFKLQVPAKWNPSKEVEFPGQVLRYEDNFDSTSNLIVTVTPTDKKSITDYGSPEEFLTQVDFLLGKQAYFGKTDSEGGFESGAVATANLLETSSSTVGGKEYYILSVLTRTADGDEGGKHQLISATVNGGKLYICKAQAGDKRWFKGARKFVENAATSFSVA 268          
BLAST of CX288226 vs. ExPASy Swiss-Prot
Match: PSBP_SPIOL (Oxygen-evolving enhancer protein 2, chloroplastic OS=Spinacia oleracea GN=PSBP PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.032e-76
Identity = 136/178 (76.40%), Postives = 154/178 (86.52%), Query Frame = 3
Query:    3 FGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFDPDAVATANILEASV----RPPYYFLSVLTRTADGDEGGKHQLITATVKGGKLYICKAQAGDKRWFKGTRKYVESTASSFSVA 524
            FGKPK NT+F+PYNGDGFKL +PSKWNPSKE+EFPGQVLRYEDNFD  SN+SV++ PTDKKSITD+GSPE+FLS+VDYLLGKQAY GKT SEGGFD   VA+AN+LE+S        YY ++VLTRTADGDEGGKHQ+I ATVK GKLYICKAQAGDKRWFKG +K+VES  SSFSVA
Sbjct:   90 FGKPKKNTEFMPYNGDGFKLLVPSKWNPSKEKEFPGQVLRYEDNFDATSNLSVLVQPTDKKSITDFGSPEDFLSQVDYLLGKQAYFGKTDSEGGFDSGVVASANVLESSTPVVDGKQYYSITVLTRTADGDEGGKHQVIAATVKDGKLYICKAQAGDKRWFKGAKKFVESATSSFSVA 267          
The following BLAST results are available for this feature:
BLAST of CX288226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_CUCSA5.108e-8485.39Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP1_ARATH2.373e-8180.90Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SOLTU1.302e-7980.90Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_PEA2.221e-7981.46Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SOLLC1.880e-7879.21Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_SINAL2.715e-7776.40Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_FRIAG2.715e-7779.21Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_TOBAC3.546e-7778.09Oxygen-evolving enhancer protein 2-2, chloroplasti... [more]
PSBP1_TOBAC3.546e-7778.65Oxygen-evolving enhancer protein 2-1, chloroplasti... [more]
PSBP_SPIOL1.032e-7676.40Oxygen-evolving enhancer protein 2, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC01018B04SK Veg1 Citrus clementina cDNA clone C01018B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288226 ID=CX288226; Name=CX288226; organism=Citrus clementina; type=EST; length=664bp
GGTTTGGTAAGCCAAAGACCAACACTGACTTCTTGCCATACAATGGAGAT
GGATTCAAGCTGTCGATTCCCTCAAAATGGAACCCCAGCAAAGAGAGAGA
GTTCCCAGGTCAGGTTCTTAGATACGAAGACAACTTTGATCCCAACAGCA
ATGTCTCCGTCATAATCACCCCAACTGACAAGAAATCCATCACTGACTAC
GGTTCCCCCGAGGAATTCCTCAGTAAGGTGGACTACTTGCTGGGAAAACA
AGCCTATTCCGGCAAAACTTCGTCTGAGGGTGGTTTCGACCCTGATGCTG
TGGCAACAGCTAACATCTTGGAGGCTTCAGTCCGACCACCATACTACTTC
TTGTCTGTATTAACAAGAACTGCTGATGGAGATGAAGGTGGCAAGCATCA
ACTAATTACAGCCACGGTTAAAGGTGGCAAGCTTTACATCTGCAAGGCGC
AAGCTGGAGACAAGAGGTGGTTTAAGGGAACAAGAAAGTATGTGGAAAGC
ACTGCCAGTTCTTTCAGTGTTGCTTGAGACATTAATCAGAATTTTTATGT
AAATCCAACTTAATGTATGCTGTTTGTTTTGAATTATCTACTCCCATCTT
TCCCCAAAAGCTTCTGAGTTTCTAATTGAAGGAGTTGGTTGGAAAAAAAA
AAAAAAAAAAAAAA
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