CX288241
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2) HSP 1 Score: 371.703 bits (953), Expect = 2.294e-102 Identity = 190/248 (76.61%), Postives = 214/248 (86.29%), Query Frame = 1 Query: 4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK------QYLLETPFPDH*VACLADDGPSA 729 FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD +RGF+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K + T P L DDGPS+ Sbjct: 396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPP-----LQDDGPSS 638
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2) HSP 1 Score: 357.451 bits (916), Expect = 4.476e-98 Identity = 183/248 (73.79%), Postives = 209/248 (84.27%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQYLLETPFPDH*VA------CLADDGPS 726 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD + RGF S RSV GFLSDV AADE+GKI + AD++VQGAVFDLPEEIA++LL+ +E P P + + L DDGP+ Sbjct: 395 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLS----MELP-PGNTITKVTKLPALQDDGPA 637
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1) HSP 1 Score: 147.132 bits (370), Expect = 9.188e-35 Identity = 93/232 (40.09%), Postives = 134/232 (57.76%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP----EEIAKELLNKQYLLETP 681 GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + +R +R +E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L + + + LS A +I ++ ++ + G FD+P E + E + ++L P Sbjct: 433 GFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVP 658
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1) HSP 1 Score: 146.747 bits (369), Expect = 1.200e-34 Identity = 91/232 (39.22%), Postives = 133/232 (57.33%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP----EEIAKELLNKQYLLETP 681 GFR+G F VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G + + +R +R +E+ G F+ V P D+++S + + +L V +V+FF P+AQRLIEEKG DALAAALA +SG S RSLI ++G+VT+ L + + + LS A + ++ ++ + G FD+P E + E + ++L P Sbjct: 430 GFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVP 655
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2) HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32 Identity = 72/161 (44.72%), Postives = 107/161 (66.46%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 480 GFR G F VLVAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + + +E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+ L Sbjct: 554 GFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSQAGFVTMIL 713
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5) HSP 1 Score: 138.272 bits (347), Expect = 4.268e-32 Identity = 73/161 (45.34%), Postives = 105/161 (65.22%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 480 GFR G F VLVAT+VAARGLDIP VDL+I P D E+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN G+VT+ L Sbjct: 482 GFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVTMIL 641
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32 Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 480 GFR G F VLVAT+VAARGLDIP VDL++ P D E+++HRSGRTGRAG+ G I + + + +E+ G KF+ + P +++++S++ + L+ V P ++ F +A++LIEEKG +ALAAALA +SG + RSLIN + G+VT+ L Sbjct: 478 GFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSQAGFVTMIL 637
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30 Identity = 87/215 (40.47%), Postives = 118/215 (54.88%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLP 630 GFR GKF VLVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A+++F + V +ER+ G KFE +S P DV +S+ + ++ V + F A++L+ G D LA ALA+ G++ RSL++ TL L T S ++ GF V+ L P ++ I I AD GAVFD+P Sbjct: 410 GFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYT-DIKKRSLLSSMDNHTTLLLQTGRSVYAAGF-----VLSTLKRFMPEERLADVKGITITADG--TGAVFDVP 616
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29 Identity = 85/213 (39.91%), Postives = 118/213 (55.40%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 630 GFR GKF LVAT+VAARGLDI +V LII E P D E ++HRSGRTGRAG G A++++ +R +V +ER+ G KFE +S P DV ++ + A + + + F A+ L+ G D L+ ALA+ +G+S RSL+ +G+VTL L F + + FL T AD I + + AD GAVFD+P Sbjct: 402 GFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLY-DPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYS-DIKERSLLTGMEGYVTLLLDAGRPFYGQSFAYTVLKRFLP---ATKADSIMGVALTADK--SGAVFDVP 607
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29 Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 1 Query: 1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 237 GFR G+F +LVATDVAARGLDIPNVDL+IHYELPN E FVHRSGRT RAGK+G+AIL++T+ Q R VR +E+D+GCKF Sbjct: 372 GFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKF 450 The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bpback to top |