CX288241

Overview
NameCX288241
Unique NameCX288241
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length739
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH3_ARATH (DEAD-box ATP-dependent RNA helicase 3 OS=Arabidopsis thaliana GN=RH3 PE=1 SV=2)

HSP 1 Score: 371.703 bits (953), Expect = 2.294e-102
Identity = 190/248 (76.61%), Postives = 214/248 (86.29%), Query Frame = 1
Query:    4 FRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNK------QYLLETPFPDH*VACLADDGPSA 729
            FRQGKFTVLVATDVA+RGLDIPNVDL+IHYELPNDPETFVHRSGRTGRAGKEG+AILM TSSQ+RTVRSLERDVGC FEF+SPP V D+LESSA+QVVATLNGVHP+S++FF+ TAQ+L EEKGTDALAAALA LSGFS+PPSSRSL++HE+GWVTLQL RD   +RGF+SARSV GFLSD+Y TAADE+GKI +IADDR+QGAVFDLPEEIAKELL K         + T  P      L DDGPS+
Sbjct:  396 FRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGSAILMHTSSQKRTVRSLERDVGCHFEFISPPTVGDLLESSADQVVATLNGVHPDSIKFFSATAQKLYEEKGTDALAAALAHLSGFSQPPSSRSLLSHEKGWVTLQLIRDPTNARGFLSARSVTGFLSDLYRTAADEVGKIFLIADDRIQGAVFDLPEEIAKELLEKDVPEGNSLSMITKLPP-----LQDDGPSS 638          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH3_ORYSJ (DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sativa subsp. japonica GN=Os03g0827700 PE=2 SV=2)

HSP 1 Score: 357.451 bits (916), Expect = 4.476e-98
Identity = 183/248 (73.79%), Postives = 209/248 (84.27%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKGTDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLPEEIAKELLNKQYLLETPFPDH*VA------CLADDGPS 726
            GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGK GTAILMFT+SQRRTVRSLERDVGC+F+F+SPP +EDVLESSAE V+ATL GVH ES+++F P A+RL EE G +ALA+ALA LSGFS+PPSSRSLI+HEQGWVTLQLTRD  + RGF S RSV GFLSDV   AADE+GKI + AD++VQGAVFDLPEEIA++LL+    +E P P + +        L DDGP+
Sbjct:  395 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLS----MELP-PGNTITKVTKLPALQDDGPA 637          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.188e-35
Identity = 93/232 (40.09%), Postives = 134/232 (57.76%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP----EEIAKELLNKQYLLETP 681
            GFR+G F VLVAT+VAARGLDIP VDL+I    P D E+++HRSGRTGRAG+ G  I  +   +R  +R +E+  G  F+ V  P   D+++S +   + +L  V   +V+FF P+AQRLIEEKG  DALAAALA +SG S     RSLI  ++G+VT+ L           + + +   LS     A  +I ++ ++  +   G  FD+P    E +  E  +  ++L  P
Sbjct:  433 GFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICICFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTMTLESLEEIQDVSCAWKELNRKLSS---NAVSQITRMCLLKGN--MGVCFDVPTTESERLQAEWHDSDWILSVP 658          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.200e-34
Identity = 91/232 (39.22%), Postives = 133/232 (57.33%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP----EEIAKELLNKQYLLETP 681
            GFR+G F VLVAT+VAARGLDIP VDL+I    P D E+++HRSGRTGRAG+ G  +  +   +R  +R +E+  G  F+ V  P   D+++S +   + +L  V   +V+FF P+AQRLIEEKG  DALAAALA +SG S     RSLI  ++G+VT+ L           + + +   LS     A   + ++ ++  +   G  FD+P    E +  E  +  ++L  P
Sbjct:  430 GFREGSFKVLVATNVAARGLDIPEVDLVIQSSPPQDVESYIHRSGRTGRAGRTGICVCFYQPRERGQLRYVEQKAGITFKRVGVPSTMDLVKSKSMDAIRSLASVSYAAVDFFRPSAQRLIEEKGAVDALAAALAHISGAS-SFEPRSLITSDKGFVTMTLESPEEIQDVSCAWKELNRKLSS---NAVSHVTRMCLLKGN--MGVCFDVPTSESERLQAEWHDSDWILSVP 655          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.502e-32
Identity = 72/161 (44.72%), Postives = 107/161 (66.46%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 480
            GFR G F VLVAT+VAARGLDIP VDL++    P D E+++HRSGRTGRAG+ G  I  + + +   +  +E+  G KF+ +  P   +++++S++  +  L+ V P ++  F  +A++LIEEKG  +ALAAALA +SG +     RSLIN + G+VT+ L
Sbjct:  554 GFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQNKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSQAGFVTMIL 713          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5)

HSP 1 Score: 138.272 bits (347), Expect = 4.268e-32
Identity = 73/161 (45.34%), Postives = 105/161 (65.22%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 480
            GFR G F VLVAT+VAARGLDIP VDL+I    P D E+++HRSGRTGRAG+ G  I  +   +   +  +E+  G KF+ +  P   +++++S++  +  L+ V P ++  F  +A++LIEEKG  +ALAAALA +SG +     RSLIN   G+VT+ L
Sbjct:  482 GFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSNVGFVTMIL 641          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.280e-32
Identity = 72/161 (44.72%), Postives = 106/161 (65.84%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG-TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL 480
            GFR G F VLVAT+VAARGLDIP VDL++    P D E+++HRSGRTGRAG+ G  I  +   +   +  +E+  G KF+ +  P   +++++S++  +  L+ V P ++  F  +A++LIEEKG  +ALAAALA +SG +     RSLIN + G+VT+ L
Sbjct:  478 GFRNGNFGVLVATNVAARGLDIPEVDLVVQSCPPKDVESYIHRSGRTGRAGRTGVCICFYQHKEEYQLAQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAIGHFKQSAEKLIEEKGAVEALAAALAHISG-ATSVDQRSLINSQAGFVTMIL 637          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.995e-30
Identity = 87/215 (40.47%), Postives = 118/215 (54.88%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQL-TRDSAFSRGFMSARSVMGFLSDVYP-TAADEIGKIHIIADDRVQGAVFDLP 630
            GFR GKF VLVAT+VAARGLDI +V LII  E P D E ++HRSGRTGRAG  G A+++F    +  V  +ER+ G KFE +S P   DV +S+  +    ++ V    +  F   A++L+   G    D LA ALA+  G++     RSL++      TL L T  S ++ GF     V+  L    P     ++  I I AD    GAVFD+P
Sbjct:  410 GFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTEAAEAISSVSDSVIPVFREQAEQLLNSSGMSAVDLLAKALAKAVGYT-DIKKRSLLSSMDNHTTLLLQTGRSVYAAGF-----VLSTLKRFMPEERLADVKGITITADG--TGAVFDVP 616          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.518e-29
Identity = 85/213 (39.91%), Postives = 118/213 (55.40%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKFEFVSPPVVEDVLESSAEQVVATLNGVHPESVEFFTPTAQRLIEEKG---TDALAAALAQLSGFSRPPSSRSLINHEQGWVTLQLTRDSAFSRGFMSARSVMGFLSDVYPTAADEIGKIHIIADDRVQGAVFDLP 630
            GFR GKF  LVAT+VAARGLDI +V LII  E P D E ++HRSGRTGRAG  G A++++   +R +V  +ER+ G KFE +S P   DV ++   +  A +  +    +  F   A+ L+   G    D L+ ALA+ +G+S     RSL+   +G+VTL L     F     +   +  FL     T AD I  + + AD    GAVFD+P
Sbjct:  402 GFRTGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLY-DPKRSSVTKIERESGVKFEHLSAPQPVDVAKAVGIEAAAAILQISDSVIPAFKDAAEELLSTSGLSAVDILSKALAKAAGYS-DIKERSLLTGMEGYVTLLLDAGRPFYGQSFAYTVLKRFLP---ATKADSIMGVALTADK--SGAVFDVP 607          
BLAST of CX288241 vs. ExPASy Swiss-Prot
Match: RH53_ORYSJ (DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 7.534e-29
Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 1
Query:    1 GFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMFTSSQRRTVRSLERDVGCKF 237
            GFR G+F +LVATDVAARGLDIPNVDL+IHYELPN  E FVHRSGRT RAGK+G+AIL++T+ Q R VR +E+D+GCKF
Sbjct:  372 GFRDGRFNILVATDVAARGLDIPNVDLVIHYELPNTSELFVHRSGRTARAGKKGSAILIYTNDQARAVRIIEQDIGCKF 450          
The following BLAST results are available for this feature:
BLAST of CX288241 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH3_ARATH2.294e-10276.61DEAD-box ATP-dependent RNA helicase 3 OS=Arabidops... [more]
RH3_ORYSJ4.476e-9873.79DEAD-box ATP-dependent RNA helicase 3 OS=Oryza sat... [more]
DDX50_HUMAN9.188e-3540.09ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]
DDX50_MOUSE1.200e-3439.22ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]
DDX21_MOUSE2.502e-3244.72Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
DDX21_HUMAN4.268e-3245.34Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 ... [more]
DDX21_RAT7.280e-3244.72Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=D... [more]
RH7_ORYSJ3.995e-3040.47DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
RH7_SPIOL1.518e-2939.91DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
RH53_ORYSJ7.534e-2973.42DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sa... [more]

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Properties
Property NameValue
Genbank descriptionC01018C07SK Veg1 Citrus clementina cDNA clone C01018C07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288241 ID=CX288241; Name=CX288241; organism=Citrus clementina; type=EST; length=739bp
GGCTTTAGGCAAGGAAAATTCACTGTTCTTGTTGCCACTGATGTTGCAGC
GCGTGGGCTTGATATCCCCAATGTTGATTTAATTATCCACTATGAACTTC
CCAATGATCCAGAGACTTTTGTGCATCGCTCTGGTCGTACTGGACGTGCA
GGGAAGGAAGGTACTGCCATCCTGATGTTTACGAGTAGCCAAAGGAGAAC
AGTGAGATCCCTTGAGCGTGATGTGGGGTGTAAGTTTGAGTTTGTTAGTC
CCCCAGTTGTAGAAGATGTTTTGGAATCATCCGCTGAGCAAGTAGTTGCC
ACTCTAAATGGAGTTCATCCCGAGTCTGTAGAGTTTTTCACCCCAACCGC
CCAACGATTGATTGAAGAAAAAGGAACAGATGCTCTTGCTGCTGCACTGG
CACAGCTGAGCGGATTTTCACGGCCTCCTTCGTCCCGTTCTCTTATCAAC
CATGAGCAGGGATGGGTGACATTGCAGTTGACTCGCGATTCAGCTTTTTC
TAGGGGATTTATGTCTGCTAGATCTGTCATGGGATTTCTTTCTGACGTTT
ATCCTACAGCTGCCGATGAAATTGGAAAAATACACATAATTGCAGATGAC
AGGGTTCAGGGAGCTGTTTTTGATCTTCCGGAGGAGATTGCAAAGGAGTT
GCTAAATAAACAATACCTCCTGGAAACACCATTTCCAGATCACTAAGTTG
CCTGTCTTGCAGATGATGGGCCCTCAGCGATACTATGGC
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