CX288249

Overview
NameCX288249
Unique NameCX288249
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig111 contig Ccv1_Contig111:1..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288249 vs. ExPASy Swiss-Prot
Match: MTPC3_ARATH (Putative metal tolerance protein C3 OS=Arabidopsis thaliana GN=MTPC3 PE=3 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.552e-23
Identity = 67/162 (41.36%), Postives = 97/162 (59.88%), Query Frame = 3 
Query:  231 SWRLNFDGFQVSPERTEKKPPRGLH-DCLGVLGPEDNVAEYYQQQVQMLEGFNEMDALAERGFVPGMT-KEERENLAR--SETLAIRISNVANMVLFAAKVYASVKSGSLAIIASTXXXXXXXXXGFILWFTAFSMQTPNPYQYPIGKKRMQPLGILVFASV 704
            S + NF        R++  P   LH D     G +++  EYY++Q+  L+ F E+++   R     +  KEE E+ A   ++ LA++ISN AN+ L A K+YA+VKSGS+AI AST         G ILWFT  SM+  N Y+YPIGK R+QP+GI++FA+V
Sbjct:   32 SMKSNFFADLPQKLRSKIDPENPLHLDVSKAAGLKEDEKEYYERQLATLKSFEEVESFLARSDEYTIDEKEEEEDRAERAAQELAMQISNWANIFLLALKIYATVKSGSIAIAASTLDSLLDLMAGGILWFTHLSMKNVNIYKYPIGKLRVQPVGIIIFAAV 193
The following BLAST results are available for this feature:
BLAST of CX288249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MTPC3_ARATH2.552e-2341.36Putative metal tolerance protein C3 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionC01018D03SK Veg1 Citrus clementina cDNA clone C01018D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288249 ID=CX288249; Name=CX288249; organism=Citrus clementina; type=EST; length=704bp
GGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGCTGCTGGTGA
ATGCCTGATAACACGCACAACACCACAACGGATTTCAGTATTCCGAGAAC
GCCACCGTTTTCAGCTCATTACATATAGGTTGTTTCACTTCTTAGGGTGA
CCCGAAAAATGGTGGAACCGGTCGCACGTGAAAGCGACGAGGAGACGTCG
CTGCTGGCGCAGCAAGGCAATGTTGACCGGTCGTGGCGTTTGAACTTCGA
CGGCTTTCAGGTATCGCCTGAACGCACAGAGAAGAAACCTCCACGTGGCC
TCCATGACTGCCTGGGAGTTTTAGGTCCAGAAGATAACGTGGCTGAATAC
TATCAACAGCAGGTACAGATGCTTGAGGGATTTAATGAAATGGATGCCTT
AGCAGAACGAGGTTTTGTTCCTGGAATGACAAAGGAAGAGCGGGAAAATT
TGGCTAGAAGTGAGACACTGGCCATTAGAATATCAAATGTTGCCAACATG
GTTCTTTTTGCTGCTAAAGTTTATGCTTCTGTCAAAAGTGGTTCATTGGC
CATCATTGCATCCACATTAGACTCCCTTCTTGATCTTCTATCGGGATTCA
TCCTGTGGTTTACTGCATTCTCCATGCAAACACCAAACCCGTACCAATAC
CCTATTGGAAAGAAAAGGATGCAGCCATTGGGGATTCTGGTGTTTGCATC
TGTC
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