CX288274

Overview
NameCX288274
Unique NameCX288274
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288274 vs. ExPASy Swiss-Prot
Match: VPE_CITSI (Vacuolar-processing enzyme OS=Citrus sinensis PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.531e-28
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = -1
Query:  249 TFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 422
            TFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA
Sbjct:  437 TFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 494          
BLAST of CX288274 vs. ExPASy Swiss-Prot
Match: VPE1_PHAVU (Vacuolar-processing enzyme OS=Phaseolus vulgaris PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.489e-20
Identity = 44/58 (75.86%), Postives = 50/58 (86.21%), Query Frame = -1
Query:  249 TFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 422
            TFE+HCG+LSQYGMKHMRS AN+CN GI KE+M EASAQAC  IP+ PWSSL +GFSA
Sbjct:  427 TFETHCGSLSQYGMKHMRSFANMCNVGIKKEQMREASAQACVTIPANPWSSLQRGFSA 484          
BLAST of CX288274 vs. ExPASy Swiss-Prot
Match: VPE_VICSA (Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 45/58 (77.59%), Postives = 49/58 (84.48%), Query Frame = -1
Query:  249 TFESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 422
            TFE+HCG+LSQYGMKHMRS ANICN GI  E MAEASAQAC +IP+ PWSSL  GFSA
Sbjct:  436 TFETHCGSLSQYGMKHMRSFANICNAGIPNEPMAEASAQACASIPANPWSSLQGGFSA 493          
BLAST of CX288274 vs. ExPASy Swiss-Prot
Match: VPEG_ARATH (Vacuolar-processing enzyme gamma-isozyme OS=Arabidopsis thaliana GN=At4g32940 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = -1
Query:  249 FESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 419
            FE HCG+LSQYG+KHMRS ANICN GI  E+M EA++QAC  +P+GPWSSL++GFSA
Sbjct:  438 FERHCGSLSQYGIKHMRSFANICNAGIQMEQMEEAASQACTTLPTGPWSSLNRGFSA 494          
BLAST of CX288274 vs. ExPASy Swiss-Prot
Match: VPEA_ARATH (Vacuolar-processing enzyme alpha-isozyme OS=Arabidopsis thaliana GN=At2g25940 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.777e-18
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -1
Query:  249 FESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 419
            FE HCG+LSQYG+KHMRS+AN+CN GI   +M EA+ QAC  IP+ PWSSLD+GFSA
Sbjct:  422 FERHCGSLSQYGIKHMRSIANMCNAGIQMRQMEEAAMQACPTIPTSPWSSLDRGFSA 478          
BLAST of CX288274 vs. ExPASy Swiss-Prot
Match: VPE_SOYBN (Vacuolar-processing enzyme OS=Glycine max PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 30/57 (52.63%), Postives = 41/57 (71.93%), Query Frame = -1
Query:  249 FESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 419
            FE+HCG L+QYGMKHMR+ ANICN+G+ +  M EA   ACE   +G +   ++G+SA
Sbjct:  439 FETHCGTLTQYGMKHMRAFANICNSGVSEASMEEACLAACEGYNAGLFHPSNRGYSA 495          
BLAST of CX288274 vs. ExPASy Swiss-Prot
Match: VPE_RICCO (Vacuolar-processing enzyme OS=Ricinus communis PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 29/57 (50.88%), Postives = 38/57 (66.67%), Query Frame = -1
Query:  249 FESHCGALSQYGMKHMRSLANICNTGIGKEKMAEASAQACENIPSGPWSSLDKGFSA 419
            FE+ CG+L+QYGMKHMR+ ANICN G+    M EA   AC    +G W   ++G+SA
Sbjct:  441 FETCCGSLTQYGMKHMRTFANICNAGVSHTSMEEACNAACSGHDAGQWHPTNQGYSA 497          
The following BLAST results are available for this feature:
BLAST of CX288274 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
VPE_CITSI5.531e-28100.00Vacuolar-processing enzyme OS=Citrus sinensis PE=2... [more]
VPE1_PHAVU2.489e-2075.86Vacuolar-processing enzyme OS=Phaseolus vulgaris P... [more]
VPE_VICSA3.250e-2077.59Vacuolar-processing enzyme OS=Vicia sativa PE=1 SV... [more]
VPEG_ARATH1.046e-1870.18Vacuolar-processing enzyme gamma-isozyme OS=Arabid... [more]
VPEA_ARATH6.777e-1868.42Vacuolar-processing enzyme alpha-isozyme OS=Arabid... [more]
VPE_SOYBN7.257e-1252.63Vacuolar-processing enzyme OS=Glycine max PE=2 SV=... [more]
VPE_RICCO6.144e-1150.88Vacuolar-processing enzyme OS=Ricinus communis PE=... [more]
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Properties
Property NameValue
Genbank descriptionC01018F05SK Veg1 Citrus clementina cDNA clone C01018F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288274 ID=CX288274; Name=CX288274; organism=Citrus clementina; type=EST; length=683bp
GCATAAAATAGCATCGCATACATCCAAAATATATACTATCAAATTACAAC
TGCGGTCTGGCAGGGAAGAGCTTTTAAATATAATAATTACAAGGAAGCAA
TCACCAGCCAAATGAAAATAGACATTGCCATAAATGGAAGCAATCATCAG
CCAAATGAAAATAGATATTGCCATATTGGCGACTATAATGAAAACTAACA
TATTTCAAGAACTGGCTTATGATATTCGCACAGTTCTCGGCTTCTTTATG
CACTGAATCCTTTGTCGAGAGAACTCCAAGGACCAGAAGGAATATTTTCA
CAGGCTTGTGCTGATGCTTCCGCCATCTTCTCTTTCCCAATTCCTGTATT
ACAGATGTTTGCAAGAGAACGCATGTGCTTCATTCCATATTGCGATAGAG
CTCCACAGTGCGACTCAAAAGTCCCCTCGTGCCGAATTCGGCACGAGGGG
CATCTTGGGCAGATCGGGCTTGGTGATCAATTGGGAGTACGAGTCATTCC
CTGAGGCCAAAGACGTTGTGGCACTGCCCTTCTTTGCCGCCTTCTTTGCT
GCAGTTAGGCTCTTTTTGGACAGATTCCTCTTTGAGATTTTAGCTAGAAG
AACTATTTTCGGGAAGGGGCATGCCAGAAATGATTTTGTGACAACATTAA
AAGGAAGACAATCAATAAATTTAAAGAGTCGGC
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