CX288288

Overview
NameCX288288
Unique NameCX288288
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14562 contig Ccv1_Contig14562:24..748. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288288 vs. ExPASy Swiss-Prot
Match: BET11_ARATH (Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 1.039e-51
Identity = 100/122 (81.97%), Postives = 112/122 (91.80%), Query Frame = 1 
Query:  169 MNSRRDYRNSKVALFDGIEEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR 534
            MN RR+ R  + +LFDGIEEGGIRA+SSYSHEI+EH+NERALEGLQDRV LLKRLSGDINEEVDTHNRML+RMGNDMD+SRG LSGTMD+FK VFETKSSRRM TLVASFV +FL++YYLTR
Sbjct:    1 MNPRREPRGGRSSLFDGIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSGDINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVIYYLTR 122
[Close]
BLAST of CX288288 vs. ExPASy Swiss-Prot
Match: BET12_ARATH (Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4)

HSP 1 Score: 151.369 bits (381), Expect = 4.687e-36
Identity = 74/129 (57.36%), Postives = 105/129 (81.40%), Query Frame = 1 
Query:  169 MNSRRDYRNSKVALFDGI---EEGGIRASSSYSHEIDEHDNERALEGLQDRVNLLKRLSGDINEEVDTHNRMLERMGNDMDASRGVLSGTMDKFKMVFETKSSRRMFTLVASFVVIFLIVYYLTR*MIY 546
            MN RR+ R S+ +LFDG+   EEG +RASSSY+H  DE DN+ ALE LQDRV+ LKR++GDI+EEV+ HNR+L+++GN MD++RG++SGT+++FK+VFE KS+R+   L+A FV++FLI+YYL R + Y
Sbjct:    1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTGDIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIMYYLIRLLNY 127
The following BLAST results are available for this feature:
BLAST of CX288288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BET11_ARATH1.039e-5181.97Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET... [more]
BET12_ARATH4.687e-3657.36Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET... [more]
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Properties
Property NameValue
Genbank descriptionC01018G08SK Veg1 Citrus clementina cDNA clone C01018G08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288288 ID=CX288288; Name=CX288288; organism=Citrus clementina; type=EST; length=725bp
CTTTGTGTATAAAATCCGAGCGGCATTTCATCGCCGTCTCCTTTCTCCCA
CCAGCTTGTCTGCTGCTGCAAGCGAATTCCTGCTTCACACCAAAGGAACA
CAATTGAGAATATCGCGAGGCTGAGCTTAATTTATCTAGAAGCGAAGAAA
GGCTGTGATCTTTGAGTCATGAATTCTAGAAGGGACTACCGTAATAGTAA
AGTCGCACTTTTTGATGGCATTGAGGAGGGTGGCATCAGAGCCTCCTCTT
CTTACTCCCATGAAATTGACGAGCATGATAATGAAAGAGCATTGGAAGGA
TTGCAAGATAGAGTCAATCTTCTGAAGAGACTCTCAGGTGATATAAATGA
AGAGGTTGACACACACAATCGCATGTTGGAACGGATGGGAAATGATATGG
ATGCTTCAAGAGGAGTCCTATCAGGAACCATGGATAAGTTTAAAATGGTT
TTCGAGACCAAATCGAGCAGGAGAATGTTTACCCTTGTTGCATCATTTGT
GGTCATTTTCCTAATTGTATACTATCTCACTAGGTAAATGATCTATGATG
TATTTGATAACGCCAGCAGCTTTATGTTAGAATTGGGATGACCCCATTTT
TATGTGGTTATGTAATCAATCTTACATGTTGCATGTAAGGAACTCGTTTG
TGGTTGTATAAAGAGTTTGTATTCTATGGAATTGTTATTAAAAGCTTGAA
ACAAAAAAAGGGGGGGCCCGGTACC
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