CX288289

Overview
NameCX288289
Unique NameCX288289
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX288289_ssr14 microsatellite CX288289_ssr14:14..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig114 contig Ccv1_Contig114:1..672. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288289 vs. ExPASy Swiss-Prot
Match: AROK_ARATH (Shikimate kinase, chloroplastic OS=Arabidopsis thaliana GN=At2g21940 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.851e-34
Identity = 78/153 (50.98%), Postives = 103/153 (67.32%), Query Frame = -1
Query:  211 MGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXXXXXXXVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSK 669
            M GTSVA+IF   GE +FR  E+ AL+KLS              +RP+NW++M +GI+++L+VPL+ALA RIAAVGTDS PLL  +S D+Y+ AF  LSA+  ER EAY NA+A VSL N+AA  G K+V D+TPT IA+E   Q   +L  +
Sbjct:  141 MNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEKE 293          
BLAST of CX288289 vs. ExPASy Swiss-Prot
Match: AROK_SOLLC (Shikimate kinase, chloroplastic OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.157e-28
Identity = 70/154 (45.45%), Postives = 97/154 (62.99%), Query Frame = -1
Query:  208 MGGTSVAQIFKESGEAYFREYESKALQKLSLXXXXXXXXXXXXXVRPLNWRFMRQGITVFLNVPLDALARRIAAVGTDSFPLLDYDSADSYTKAFTALSALSKERSEAYANADATVSLLNLAACIGLKDVLDITPTTIAMEVLVQAQKYLNSKR 669
            +GG +VA+IF+  GE++FR+ E++ L KLSL             VRP+NWR M +GI+V+L+VPL+ALA+RI   GT S PLL  +S D Y      L+ L + R E YANA A VSL N+ A    KDV  ITP  I +EVL+Q + +L +++
Sbjct:  143 VGGITVAEIFELRGESFFRDNETEVLHKLSLMHRLVVSTGGGAVVRPINWRHMHKGISVWLDVPLEALAKRITTEGTKSRPLLHEESGDVYDTTLKRLTTLMETRGENYANASARVSLENI-ALKREKDVCHITPAEITLEVLIQIENFLKTQK 295          
The following BLAST results are available for this feature:
BLAST of CX288289 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
AROK_ARATH3.851e-3450.98Shikimate kinase, chloroplastic OS=Arabidopsis tha... [more]
AROK_SOLLC3.157e-2845.45Shikimate kinase, chloroplastic OS=Solanum lycoper... [more]
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Properties
Property NameValue
Genbank descriptionC01018G09SK Veg1 Citrus clementina cDNA clone C01018G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288289 ID=CX288289; Name=CX288289; organism=Citrus clementina; type=EST; length=672bp
GACATTTGATTGAATTTATTTATTTCATGTGTACAACAATTCAAAAAGAA
AGGCCTGTAAATTTTTACTCACGGCATGTATAACATTGGCAGCCTTGATG
AAAATGAAAACAAATTCACTGGATGATCGCATTACTGAAAAGAGAGGTAA
ATATAGGCAATGAATTTGCTTTGTTAAGAAAGCATTTGAATGGACCCGCC
ATTATCGCCGTTTAGAATTTAGATATTTCTGAGCTTGTACAAGCACCTCC
ATTGCTATGGTGGTGGGCGTAATATCTAGTACATCTTTGAGACCAATGCA
TGCTGCAAGATTGAGAAGAGAAACGGTAGCATCAGCATTTGCATATGCCT
CGGATCTCTCCTTTGAAAGAGCAGACAGTGCCGTAAATGCCTTTGTATAA
GAATCGGCTGAATCATAATCCAAGAGAGGGAAGGAATCTGTTCCAACAGC
GGCAATTCTCCTTGCCAAGGCATCCAGGGGTACATTGAGAAAGACAGTGA
TGCCCTGCCTCATAAATCTCCAGTTGAGTGGGCGAACCACTGCACCACCA
CCTGTGGCTACAACTTGTTGTGGTACCAAGGACAATTTCTGCAGTGCCTT
GCTCTCATATTCTCTGAAGTAAGCTTCCCCAGACTCCTTAAAAATTTGAG
CCACAGAAGTTCCACCCATAAG
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