CX288293

Overview
NameCX288293
Unique NameCX288293
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_ARATH (Alanyl-tRNA synthetase, mitochondrial OS=Arabidopsis thaliana GN=ALATS PE=1 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 4.936e-45
Identity = 88/102 (86.27%), Postives = 95/102 (93.14%), Query Frame = 3
Query:    3 HVDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            H+DQKGS+VLPEKLRFDFSHGKPVDPE LRRIESIVN+QIK ELDVFSKEA L+EAKRI GLRAVFGEVYPDPVRVV+IGRKVEDLLADPEN EW  +S+EF
Sbjct:  663 HIDQKGSIVLPEKLRFDFSHGKPVDPEDLRRIESIVNKQIKDELDVFSKEAVLSEAKRIKGLRAVFGEVYPDPVRVVSIGRKVEDLLADPENNEWSLLSSEF 764          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_YEAST (Alanyl-tRNA synthetase, cytoplasmic OS=Saccharomyces cerevisiae GN=ALA1 PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.434e-30
Identity = 64/101 (63.37%), Postives = 77/101 (76.24%), Query Frame = 3
Query:    6 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            VDQKGS+V PEKLRFDFSH K V  E L+++E I NEQIK  L VF KE  L  AK I+G+RAVFGE YPDPVRVV++G+ +E+LLA+P N+EW   S EF
Sbjct:  618 VDQKGSLVAPEKLRFDFSHKKAVSNEELKKVEDICNEQIKENLQVFYKEIPLDLAKSIDGVRAVFGETYPDPVRVVSVGKPIEELLANPANEEWTKYSIEF 718          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYA_DICDI (Alanyl-tRNA synthetase OS=Dictyostelium discoideum GN=alaS PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.008e-26
Identity = 57/101 (56.44%), Postives = 75/101 (74.26%), Query Frame = 3
Query:    6 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            +DQ+GS V  ++ RFDFS G+ +  + L +I+ IVN+QI  +LDV +KE  LA AK+INGLRAVFGEVYPDPVRVV++G  VE L+ +P N EW + S EF
Sbjct:  609 IDQRGSFVDAQRFRFDFSFGRAITKDELIKIDQIVNDQIFKQLDVHAKEVGLASAKKINGLRAVFGEVYPDPVRVVSVGVPVEQLIENPTNPEWANYSIEF 709          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_SCHPO (Probable alanyl-tRNA synthetase, cytoplasmic OS=Schizosaccharomyces pombe GN=SPAC23C11.09 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.384e-23
Identity = 53/101 (52.48%), Postives = 70/101 (69.31%), Query Frame = 3
Query:    6 VDQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            +DQ+GS+V  EKLRFDFS+   +  + L  +E+  N  I+  L V+SKE  L++AK INGLRAVFGEVYPDPVRVV IG  ++ LL +P+  +W   S EF
Sbjct:  624 IDQRGSLVSQEKLRFDFSYKSSIPIDKLLLVENYCNNVIQDNLSVYSKEVALSKAKEINGLRAVFGEVYPDPVRVVCIGVDIDTLLQEPKKPDWTKYSIEF 724          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_PONAB (Alanyl-tRNA synthetase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.374e-20
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:    9 DQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            DQKGS+V P++LRFDF+    +  + +++ E I NE I+A   V++++ +LA AK I GLRAVF E YPDPVRVV+IG  V +LL DP        S EF
Sbjct:  623 DQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKPVYTQDCSLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEF 722          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_HUMAN (Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.088e-19
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:    9 DQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            DQKGS+V P++LRFDF+    +  + +++ E I NE I+A   V++++  LA AK I GLRAVF E YPDPVRVV+IG  V +LL DP        S EF
Sbjct:  623 DQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIANEMIEAAKAVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEF 722          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_RAT (Alanyl-tRNA synthetase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 3.562e-19
Identity = 50/100 (50.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    9 DQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            DQKGS+V P++LRFDF+    +  E +++ E IVN  I+A   V++ +  LA AK I GLRAVF E YPDPVRVV+IG  V +LL DP        S EF
Sbjct:  623 DQKGSLVAPDRLRFDFTAKGAMSTEQIKKTEEIVNGMIEAAKPVYTLDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEF 722          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_MESAU (Alanyl-tRNA synthetase, cytoplasmic OS=Mesocricetus auratus GN=AARS PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.652e-19
Identity = 49/100 (49.00%), Postives = 64/100 (64.00%), Query Frame = 3
Query:    9 DQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            DQKGS+V P++LRFDF+    +  + ++  E IVN  I+A   V++++  LA AK I GLRAVF E YPDPVRVV+IG  V +LL DP        S EF
Sbjct:  623 DQKGSLVAPDRLRFDFTAKGAMSTQQIKEAEEIVNAMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPSGPAGSLTSVEF 722          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_BOMMO (Alanyl-tRNA synthetase, cytoplasmic OS=Bombyx mori PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.935e-19
Identity = 45/100 (45.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:    9 DQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            DQ+GS+V+P++LRFDF++  P+  + ++  E+ + E I     V++   +L+EAK+INGLRA+F E YPDPVRVV++G  VEDL+ +P+       S EF
Sbjct:  624 DQRGSLVMPDRLRFDFTNKGPMTIKQIKDTENEIKEIIAKNKTVYANYTSLSEAKKINGLRAMFDEHYPDPVRVVSVGVPVEDLIKNPDAPTGFETSVEF 723          
BLAST of CX288293 vs. ExPASy Swiss-Prot
Match: SYAC_MOUSE (Alanyl-tRNA synthetase, cytoplasmic OS=Mus musculus GN=Aars PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.036e-18
Identity = 49/100 (49.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:    9 DQKGSVVLPEKLRFDFSHGKPVDPEHLRRIESIVNEQIKAELDVFSKEATLAEAKRINGLRAVFGEVYPDPVRVVAIGRKVEDLLADPENKEWLSISAEF 308
            DQKGS+V P++LRFDF+    +  + +++ E IVN  I+A   V++++  LA AK I GLRAVF E YPDPVRVV+IG  V +LL DP        S EF
Sbjct:  623 DQKGSLVAPDRLRFDFTAKGAMSTQQIKKAEEIVNGMIEAAKPVYTQDCPLAAAKAIQGLRAVFDETYPDPVRVVSIGVPVSELLDDPCGPAGSLTSVEF 722          
The following BLAST results are available for this feature:
BLAST of CX288293 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 263
Match NameE-valueIdentityDescription
SYA_ARATH4.936e-4586.27Alanyl-tRNA synthetase, mitochondrial OS=Arabidops... [more]
SYAC_YEAST3.434e-3063.37Alanyl-tRNA synthetase, cytoplasmic OS=Saccharomyc... [more]
SYA_DICDI3.008e-2656.44Alanyl-tRNA synthetase OS=Dictyostelium discoideum... [more]
SYAC_SCHPO2.384e-2352.48Probable alanyl-tRNA synthetase, cytoplasmic OS=Sc... [more]
SYAC_PONAB9.374e-2049.00Alanyl-tRNA synthetase, cytoplasmic OS=Pongo abeli... [more]
SYAC_HUMAN2.088e-1949.00Alanyl-tRNA synthetase, cytoplasmic OS=Homo sapien... [more]
SYAC_RAT3.562e-1950.00Alanyl-tRNA synthetase, cytoplasmic OS=Rattus norv... [more]
SYAC_MESAU4.652e-1949.00Alanyl-tRNA synthetase, cytoplasmic OS=Mesocricetu... [more]
SYAC_BOMMO7.935e-1945.00Alanyl-tRNA synthetase, cytoplasmic OS=Bombyx mori... [more]
SYAC_MOUSE1.036e-1849.00Alanyl-tRNA synthetase, cytoplasmic OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionC01018H01SK Veg1 Citrus clementina cDNA clone C01018H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288293 ID=CX288293; Name=CX288293; organism=Citrus clementina; type=EST; length=682bp
ATCACGTCGATCAGAAAGGGTCCGTTGTTCTTCCTGAAAAGTTAAGATTC
GACTTTTCTCATGGCAAACCAGTTGATCCTGAGCATTTAAGAAGAATTGA
ATCAATTGTAAACGAGCAGATAAAAGCTGAATTAGATGTGTTTTCAAAGG
AGGCAACACTTGCTGAAGCCAAGCGCATCAATGGGTTGCGAGCTGTTTTT
GGAGAAGTTTATCCTGATCCTGTTAGAGTAGTTGCAATTGGTCGGAAGGT
TGAGGATCTATTGGCTGATCCAGAAAATAAAGAATGGTTGTCAATTTCAG
CAGAATTTGCGGCAATGAAATTGAGGTGACCAAAGGATTTTTAAGTTTGT
CTTTCCAGAAATATGATGTTGCTGCTCGTCATGAACATCTACTGAAGTAT
TATTGAAACATGAAAGGAAACAGAAGAATATAGGAAAATGATTAGGGTGT
TTATATCAGCCAGGAAATTAAAAAGCAATTGCTACTGAACATTATTATAC
TGTATACATCATTGTTGATCATCTATCTATTTAGGGCCCGTTTGGTATCG
TTTTTGGGCTAGTGTTTTCATTTTCATTTTCGGAGTACTGATGTAATACA
TGTTTGGTGGGCTGAATCCAAAAACAAATTACAAAATAAGAAATCCAAAT
CTACTTTTTATGACTAAGAAAAAAAAAAAAAA
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