CX288345

Overview
NameCX288345
Unique NameCX288345
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288345 vs. ExPASy Swiss-Prot
Match: NXN_MOUSE (Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.211e-22
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   17 SDLAGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 379
            S L G    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQEFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of CX288345 vs. ExPASy Swiss-Prot
Match: NXN_BOVIN (Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.072e-21
Identity = 51/121 (42.15%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   17 SDLAGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 379
            S L G    +YFSA+W PPC + T VLV+ Y +++  G  FE++FVS+D   ++F  Y + MPWLAVPY+D   +  LNR + I+GIP L+VL P  +    T    VE++     R FP+
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQKFEIIFVSADRSEDSFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIVLDPQGEV--ITRQGRVEVLNDEDCRGFPW 307          
BLAST of CX288345 vs. ExPASy Swiss-Prot
Match: NXN_HUMAN (Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 2.389e-21
Identity = 50/121 (41.32%), Postives = 73/121 (60.33%), Query Frame = 2
Query:   17 SDLAGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDGVELIYKYGIRAFPF 379
            S L G    +YFSA+W PPC + T VLV+ Y +++  G +FE++FVS+D    +F  Y + MPWLAVPY+D   +  LNR + I+GIP L++L P  +    T    VE++     R FP+
Sbjct:  189 SSLEGSHVGVYFSAHWCPPCRSLTRVLVESYRKIKEAGQNFEIIFVSADRSEESFKQYFSEMPWLAVPYTDEARRSRLNRLYGIQGIPTLIMLDPQGEV--ITRQGRVEVLNDEDCREFPW 307          
BLAST of CX288345 vs. ExPASy Swiss-Prot
Match: NXN_XENLA (Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.951e-21
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 2
Query:   17 SDLAGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVLQPYDDKDDATLHDG-VELIYKYGIRAFPF 379
            S L G    +YFSA W PPC + T VLV+ Y +++ +G  FE+V VS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L P   K +     G VE++     + FP+
Sbjct:  168 STLEGSYVGIYFSAYWCPPCRSLTRVLVESYRKIKESGQKFEIVLVSADRSEESFKQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPNLIILDP---KGEVITRQGRVEVLRDIDCKEFPW 286          
BLAST of CX288345 vs. ExPASy Swiss-Prot
Match: NXN_DANRE (Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.685e-20
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 2
Query:   23 LAGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 295
            L G    +YFSA+W PPC + T VLV+ Y +++  G  FE+VFVS+D    +F  Y + MPWLAVPYSD   +  LNR + I+GIP L++L
Sbjct:  174 LEGSYVGVYFSAHWCPPCRSLTRVLVESYRKVKETGQKFEIVFVSADRSEESFTQYFSEMPWLAVPYSDEARRSRLNRLYGIQGIPTLILL 264          
BLAST of CX288345 vs. ExPASy Swiss-Prot
Match: TYPX_TRYBB (Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.039e-16
Identity = 41/97 (42.27%), Postives = 59/97 (60.82%), Query Frame = 2
Query:    5 QVKVSDLAGKVTALYFSANWYPPCGNFTGVLVDVYEELRNNGSDFEVVFVSSDEDLNAFNNYRACMPWLAVPYSDLETKKALNRKFDIEGIPCLVVL 295
            +V +  L GK   LYFSA+W PPC  FT VL + YE+  +   +FEVV +S DE+ + F++Y   MPWLA+P+    T   L + F +E IP L+ +
Sbjct:   20 EVSLGSLVGKTVFLYFSASWCPPCRGFTPVLAEFYEK-HHVAKNFEVVLISWDENESDFHDYYGKMPWLALPFDQRSTVSELGKTFGVESIPTLITI 115          
The following BLAST results are available for this feature:
BLAST of CX288345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NXN_MOUSE8.211e-2242.15Nucleoredoxin OS=Mus musculus GN=Nxn PE=1 SV=1[more]
NXN_BOVIN1.072e-2142.15Nucleoredoxin OS=Bos taurus GN=NXN PE=2 SV=1[more]
NXN_HUMAN2.389e-2141.32Nucleoredoxin OS=Homo sapiens GN=NXN PE=1 SV=2[more]
NXN_XENLA6.951e-2141.80Nucleoredoxin OS=Xenopus laevis GN=nxn PE=2 SV=1[more]
NXN_DANRE7.685e-2048.35Nucleoredoxin OS=Danio rerio GN=nxn PE=2 SV=1[more]
TYPX_TRYBB1.039e-1642.27Tryparedoxin OS=Trypanosoma brucei brucei PE=1 SV=... [more]
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Properties
Property NameValue
Genbank descriptionC01019D12SK Veg1 Citrus clementina cDNA clone C01019D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288345 ID=CX288345; Name=CX288345; organism=Citrus clementina; type=EST; length=704bp
CACTCAGGTGAAAGTCTCTGATCTTGCAGGCAAGGTCACAGCCCTTTACT
TCTCAGCTAACTGGTATCCGCCGTGTGGAAACTTCACCGGAGTTCTTGTT
GACGTTTACGAAGAGCTGAGGAACAATGGATCCGATTTTGAGGTTGTCTT
TGTGTCATCTGATGAAGACTTGAATGCCTTCAACAACTACCGTGCATGCA
TGCCATGGCTAGCAGTTCCATATTCGGATTTGGAAACAAAGAAGGCCTTG
AACCGAAAATTTGACATCGAAGGCATTCCTTGCTTGGTTGTGTTGCAACC
TTATGATGATAAAGATGATGCAACATTGCATGATGGAGTTGAGCTCATTT
ACAAGTATGGGATCAGAGCTTTCCCATTTACTAAAGAGAAGCTTGAGGAA
TTGCAAAAGGAAGAAAAAGAGAAGCACGAACGCCAAACTTTAATTAATTT
ATTAACAAACCACGACAGAGGCTATCTTTTGGGTCACCCTCCTGATGAAA
AGGTACCCGTATCTTCCCTGGTGGGTAAAACGGTTGGGCTTTATTTCTCA
GCCAGATGGTGCATTCCATGTGAGAAATTCATGCCTAAGTTGCTCTCCAT
CTACCAGAAAATAAAGNCAAATCTGGTGGAAAAAGGAGATGCACTTGAGG
ATTTTGAAGTGGTATTTGTGTCGACTGATCGTGACCAACATCCTTCGAAT
CTTA
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