CX288365

Overview
NameCX288365
Unique NameCX288365
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length677
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8818 contig Ccv1_Contig8818:597..1273. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUSY_SOYBN (Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2)

HSP 1 Score: 269.626 bits (688), Expect = 1.046e-71
Identity = 125/144 (86.81%), Postives = 138/144 (95.83%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 461
            ++GAFVQPA+YEAFGLTVVEAMTCGLPTFATC GGPAEIIV+GKSG+HIDPYHG++AA++LVDFFEKCK DP++WDKIS  GL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDR ESRRYLEMFYALKYRKLAESVPLA E
Sbjct:  662 TRGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVDFFEKCKLDPTHWDKISKAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAAE 805          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUSY_VICFA (Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.366e-71
Identity = 128/145 (88.28%), Postives = 140/145 (96.55%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 464
            +KGAFVQPA+YEAFGLTVVEAM  GLPTFAT  GGPAEIIV+GKSG+HIDPYHG++AA++LV+FFEK KADPS+WDKISLGGL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE
Sbjct:  662 TKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISLGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 806          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUSY_PHAAU (Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 2.330e-71
Identity = 126/144 (87.50%), Postives = 138/144 (95.83%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 461
            +KGAFVQPA+YEAFGLTVVEAMTCGLPTFATC GGPAEIIV+GKSG+HIDPYHG++AA++LV+FFEK K DPS+WDKIS  GL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDR ESRRYLEMFYALKYRKLAESVPLAVE
Sbjct:  662 TKGAFVQPAVYEAFGLTVVEAMTCGLPTFATCNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKVDPSHWDKISQAGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRRESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUS1_ARATH (Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1 PE=2 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 3.974e-71
Identity = 124/145 (85.52%), Postives = 138/145 (95.17%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 464
            +KGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIV+GKSG+HIDPYHG+QAA+ L DFF KCK DPS+WD+IS GGL+RIEEKYTW+IYSQRLLTLTGVYGFWKHVSNLDRLE+RRYLEMFYALKYR LA++VPLA ++
Sbjct:  664 TKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADFFTKCKEDPSHWDEISKGGLQRIEEKYTWQIYSQRLLTLTGVYGFWKHVSNLDRLEARRYLEMFYALKYRPLAQAVPLAQDD 808          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUSY_MEDSA (Sucrose synthase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 4.394e-70
Identity = 126/144 (87.50%), Postives = 137/144 (95.14%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 461
            +KGAFVQPA+YEAFGLTVVEAM  GLPTFAT  GGPAEIIV+GKSG+HIDPYHG++AA++LV+FFEK KADPS+WDKIS GGL+RIEEKYTW IYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE
Sbjct:  662 TKGAFVQPAVYEAFGLTVVEAMATGLPTFATLNGGPAEIIVHGKSGFHIDPYHGDRAADLLVEFFEKVKADPSHWDKISQGGLQRIEEKYTWTIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 805          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUS1_DAUCA (Sucrose synthase isoform 1 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.670e-69
Identity = 124/145 (85.52%), Postives = 133/145 (91.72%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVEE 464
            +KGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+GKSG+HIDPYHGEQ AE+LV+FFEKCK DPS WD IS GGLKRI+EKYTW+IYS+RLLTL GVYGFWKHVS LDRLE RRYLEMFYALKYRKLAESVPLA +E
Sbjct:  664 TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATLHGGPAEIIVHGKSGFHIDPYHGEQVAELLVNFFEKCKTDPSQWDAISAGGLKRIQEKYTWQIYSERLLTLAGVYGFWKHVSKLDRLEIRRYLEMFYALKYRKLAESVPLAKDE 808          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUSY_ALNGL (Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.082e-68
Identity = 123/142 (86.62%), Postives = 133/142 (93.66%), Query Frame = 3
Query:   36 GAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 461
            G    PA+YEAFGLTVVE+MTCGLPTFATCKGGPAEIIV+GKSG+HIDPYHGEQAA++LVDFFEK KADPS+W KISLGGL+RI EKYTWKIYS+RLLTLTGV  FWKHVSNLDRLESRRY+EMFYALKYRKLAESVPLAVE
Sbjct:  662 GLCAGPAIYEAFGLTVVESMTCGLPTFATCKGGPAEIIVHGKSGFHIDPYHGEQAAQLLVDFFEKTKADPSHWAKISLGGLQRIHEKYTWKIYSERLLTLTGVTAFWKHVSNLDRLESRRYIEMFYALKYRKLAESVPLAVE 803          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUS1_SOLTU (Sucrose synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 5.371e-68
Identity = 120/144 (83.33%), Postives = 132/144 (91.67%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 461
            +KGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+GKSG+HIDPYHGEQAA++L DFFEKCK DPS+W+ IS+GGLKRIEEKYTW+IYS+ LLTL  VYGFWKHVS LDRLE RRYLEMFYALKYRK+AE+VPLA E
Sbjct:  662 TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKDPSHWETISMGGLKRIEEKYTWQIYSESLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKYRKMAEAVPLAAE 805          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUSY_SOLLC (Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.563e-67
Identity = 119/144 (82.64%), Postives = 132/144 (91.67%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 461
            +KGAFVQPA YEAFGLTVVEAMTCGLPTFAT  GGPAEIIV+GKSG+HIDPYHGEQAA++L DFFEKCK +PS+W+ IS GGLKRI+EKYTW+IYS+RLLTL  VYGFWKHVS LDRLE RRYLEMFYALKYRK+AE+VPLA E
Sbjct:  662 TKGAFVQPAFYEAFGLTVVEAMTCGLPTFATNHGGPAEIIVHGKSGFHIDPYHGEQAADLLADFFEKCKKEPSHWETISTGGLKRIQEKYTWQIYSERLLTLAAVYGFWKHVSKLDRLEIRRYLEMFYALKYRKMAEAVPLAAE 805          
BLAST of CX288365 vs. ExPASy Swiss-Prot
Match: SUS2_TULGE (Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 5.028e-66
Identity = 118/144 (81.94%), Postives = 131/144 (90.97%), Query Frame = 3
Query:   30 SKGAFVQPALYEAFGLTVVEAMTCGLPTFATCKGGPAEIIVNGKSGYHIDPYHGEQAAEILVDFFEKCKADPSYWDKISLGGLKRIEEKYTWKIYSQRLLTLTGVYGFWKHVSNLDRLESRRYLEMFYALKYRKLAESVPLAVE 461
            SKG FVQPA YEAFGLTVVE+MTCGLPTFATC GGPAEIIV+G SGYHIDPYHG++AAE+LVDFFEK K D ++WD IS GGLKRI EKYTWKIYS+RLLTL GVYGFWK+VSNLDR E++RYLEMFYALKYR LA+SVPLAV+
Sbjct:  663 SKGVFVQPAFYEAFGLTVVESMTCGLPTFATCHGGPAEIIVHGVSGYHIDPYHGDKAAELLVDFFEKSKKDQTHWDAISNGGLKRIYEKYTWKIYSERLLTLAGVYGFWKYVSNLDRRETKRYLEMFYALKYRNLAKSVPLAVD 806          
The following BLAST results are available for this feature:
BLAST of CX288365 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
SUSY_SOYBN1.046e-7186.81Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2[more]
SUSY_VICFA1.366e-7188.28Sucrose synthase OS=Vicia faba GN=SUCS PE=2 SV=1[more]
SUSY_PHAAU2.330e-7187.50Sucrose synthase OS=Phaseolus aureus GN=SS1 PE=1 S... [more]
SUS1_ARATH3.974e-7185.52Sucrose synthase 1 OS=Arabidopsis thaliana GN=SUS1... [more]
SUSY_MEDSA4.394e-7087.50Sucrose synthase OS=Medicago sativa PE=2 SV=1[more]
SUS1_DAUCA1.670e-6985.52Sucrose synthase isoform 1 OS=Daucus carota PE=2 S... [more]
SUSY_ALNGL1.082e-6886.62Sucrose synthase OS=Alnus glutinosa GN=SUS1 PE=2 S... [more]
SUS1_SOLTU5.371e-6883.33Sucrose synthase OS=Solanum tuberosum PE=2 SV=1[more]
SUSY_SOLLC1.563e-6782.64Sucrose synthase OS=Solanum lycopersicum PE=2 SV=1[more]
SUS2_TULGE5.028e-6681.94Sucrose synthase 2 OS=Tulipa gesneriana PE=2 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC01019F08SK Veg1 Citrus clementina cDNA clone C01019F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288365 ID=CX288365; Name=CX288365; organism=Citrus clementina; type=EST; length=677bp
GAGGCCTCGTGCCGAATTCGGCACGAGGATCAAAGGGAGCTTTTGTGCAA
CCTGCACTGTATGAGGCCTTTGGCTTGACTGTTGTTGAGGCCATGACCTG
TGGATTGCCAACATTTGCAACTTGCAAGGGTGGCCCCGCTGAGATTATCG
TTAACGGGAAATCTGGCTACCACATTGATCCTTACCATGGTGAGCAGGCT
GCTGAGATCCTTGTTGACTTCTTTGAGAAGTGCAAGGCAGATCCCTCATA
CTGGGACAAGATATCACTGGGTGGCCTGAAGCGTATTGAAGAGAAGTATA
CATGGAAAATTTACTCTCAGAGGCTTCTGACCCTGACTGGAGTCTATGGG
TTCTGGAAACATGTATCTAACCTTGATCGTCTTGAGAGCCGTCGATACCT
TGAAATGTTTTATGCTCTCAAGTACCGTAAGCTGGCTGAATCTGTTCCTC
TGGCTGTGGAGGAGTAAATGGACATTGAGGGAAGCTCTCAGGGTGGTTGG
TCCGAGTGGAGGTTTCTTGAGTTGTGGAGAATAATGTCGCTTCCGGGATT
GCGATTGGACAAAGACTTTTTTCCCCCCGTTAAATTTTCTTTTTTCCAAT
TTTTTTTTGCCTTTTTGCATTTCTCAGCATTGTTTGTACTTTTGGGTGTT
CCACCCTCATCAATTCCATTATAGTTT
back to top