CX288384

Overview
NameCX288384
Unique NameCX288384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX288384 vs. ExPASy Swiss-Prot
Match: BSPA_POPDE (Bark storage protein A OS=Populus deltoides GN=BSPA PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.647e-38
Identity = 84/192 (43.75%), Postives = 122/192 (63.54%), Query Frame = 2 
Query:   77 IGLVMAYPPEELALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGS-SNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQ-LQDLELRRCLNDTYCLPERPK 646
            +GLV      E AL  S L+  +S    +D+AGRRF+ G +    ++YV TG  +VN   T+QILL  F+I GV+++G AGS    ++  GDVSV + VAFTG W WK F SE G+L    FG FN+P  G+NLL  VE+   +++S  +  +E+FWLP+   W++ AT+ L+D++LR+C +D  CLP +PK
Sbjct:   29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSPSVNMATTLQILLVRFNIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVWNWKKFGSEKGKLV---FGDFNYPENGENLLGTVEYEKIKMFSPSEAPKEVFWLPITKSWYNAATEALKDMKLRKCYSDE-CLPGKPK 216
[Close]
BLAST of CX288384 vs. ExPASy Swiss-Prot
Match: BSPB_POPDE (Bark storage protein B OS=Populus deltoides GN=BSP PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.378e-37
Identity = 83/192 (43.23%), Postives = 120/192 (62.50%), Query Frame = 2 
Query:   77 IGLVMAYPPEELALITSRLFVHNSRIPFIDLAGRRFNVGKIKNVDVIYVMTGEQTVNSGITVQILLDAFDIRGVVHYGTAGS-SNNSLSFGDVSVMKYVAFTGSWKWKAFKSETGQLPELDFGAFNFPVRGKNLLAKVEFTPSQLYSAGKPMEELFWLPVDSEWFDIATQ-LQDLELRRCLNDTYCLPERPK 646
            +GLV      E AL  S L+  +S    +D+AGRRF+ G +    ++YV TG  +VN   T+QILL  F I GV+++G AGS    ++  GDVSV + VAFTG   WK F+SE G+L    FG FN+P  G+NLL  VE+   +++S  +  +E+FWLP+   W++ AT+ L+D++LR+C +D  CLP  PK
Sbjct:   29 LGLVFTSDNNERALQDSGLYSPDSEDSSVDIAGRRFHSGTLNGSSIVYVKTGSHSVNMATTLQILLARFSIHGVIYFGNAGSLDKKTMVPGDVSVPQAVAFTGVCNWKKFRSEKGKLV---FGDFNYPENGENLLGTVEYEKIKMFSPSEAPKEVFWLPITKSWYNAATEALKDMKLRKCYSDE-CLPGEPK 216
The following BLAST results are available for this feature:
BLAST of CX288384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BSPA_POPDE1.647e-3843.75Bark storage protein A OS=Populus deltoides GN=BSP... [more]
BSPB_POPDE2.378e-3743.23Bark storage protein B OS=Populus deltoides GN=BSP... [more]
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Properties
Property NameValue
Genbank descriptionC01019H04SK Veg1 Citrus clementina cDNA clone C01019H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288384 ID=CX288384; Name=CX288384; organism=Citrus clementina; type=EST; length=703bp
ACACACGGTGCAGCTGAGGAGTAATCACCCAATGCATGGGATTGTTGATA
GAGTCAACGAAATTGGAGGGCCTTATATTGGACTTGTCATGGCTTATCCT
CCTGAAGAATTGGCTCTCATCACTTCCCGTTTATTTGTTCACAACTCACG
GATCCCCTTCATTGACTTGGCTGGAAGAAGATTCAACGTGGGGAAGATTA
AGAACGTTGATGTAATCTATGTAATGACTGGGGAGCAAACGGTAAATTCA
GGCATAACAGTACAAATTCTACTTGATGCATTTGATATTCGAGGGGTAGT
CCATTATGGCACAGCTGGAAGCAGTAATAATTCTTTGTCCTTTGGTGATG
TTAGTGTGATGAAGTATGTAGCTTTTACGGGTTCTTGGAAATGGAAGGCA
TTCAAGTCGGAGACAGGTCAATTACCAGAACTAGATTTTGGAGCCTTTAA
TTTTCCTGTAAGAGGGAAGAATTTGCTGGCAAAGGTGGAGTTCACACCAA
GCCAGTTATATTCTGCTGGTAAACCAATGGAAGAGTTGTTCTGGCTCCCC
GTCGATTCAGAGTGGTTTGATATTGCCACTCAACTTCAGGATTTAGAGTT
AAGACGATGTTTGAATGACACATACTGCCTACCAGAGAGACCAAAGTCAT
TGTTGGATTAAGGGTTCCACGCAGATATATTCTCGATATGCAGCATATAG
GGA
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