CX288388

Overview
NameCX288388
Unique NameCX288388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length781
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2938 contig Ccv1_Contig2938:373..1153. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME54_ARATH (Probable pectinesterase/pectinesterase inhibitor 54 OS=Arabidopsis thaliana GN=PME54 PE=2 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 4.919e-58
Identity = 123/239 (51.46%), Postives = 152/239 (63.60%), Query Frame = 3
Query:   63 KHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            KHD+QTWL AA+TFQQ CKDS+   G S+    I  ISQKMD+LS+L SN L LV+ I +   PK          +    P WV+A  R+LL   R  A+V+VA+DG+G+YRTV EA++AA GN                           GK  T+I GDD+A  GTS+P TAT T+TGDGFIARDIG  N AGP+G QA+AL++ SD +V YRCSI+GYQDTLYA ALRQFYR+ DI
Sbjct:  140 KHDVQTWLSAAMTFQQACKDSILDSGGSSSASAISHISQKMDHLSRLVSNSLTLVDTIMKNPKPKT---------KSTALPRWVTAGERRLL-VGRARAHVVVAKDGSGDYRTVMEAVTAAHGN---------------------------GKDLTVIVGDDSATGGTSVPDTATMTVTGDGFIARDIGIKNIAGPRGHQAIALSITSDQSVLYRCSISGYQDTLYAAALRQFYRECDI 341          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.664e-47
Identity = 114/256 (44.53%), Postives = 151/256 (58.98%), Query Frame = 3
Query:   24 RITISPQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQA-PRINANVIVAQDGTGNYRTVSEAISAAS---GNRFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            ++  +  +SP   K D QTWL  ALT  +TC+ S+  LG+     V+  +S  +   ++L SN L+L N++          YN      +  FP WV   +RKLLQ  PR  AN++VAQDG+GN +T+ EA++AAS   G+R+VIY+KAG Y E I      I  +GDG   TIITG  +   G +   +AT  + GD FIARDI   NTAGP   QA+AL   SD +VFYRCS  GYQDTLY  + RQFYR+ DI
Sbjct:  108 KLNQTSNSSPGCTKVDKQTWLSTALTNLETCRASLEDLGVP--EYVLPLLSNNV---TKLISNTLSL-NKVP---------YNE--PSYKDGFPTWVKPGDRKLLQTTPR--ANIVVAQDGSGNVKTIQEAVAAASRAGGSRYVIYIKAGTYNENIEVKLKNIMFVGDGIGKTIITGSKSVGGGATTFKSATVAVVGDNFIARDITIRNTAGPNNHQAVALRSGSDLSVFYRCSFEGYQDTLYVHSQRQFYRECDI 344          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 1.939e-46
Identity = 112/241 (46.47%), Postives = 144/241 (59.75%), Query Frame = 3
Query:   60 NKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAASGN-RFVIYVKAGVYKEKIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            +K D QTWL  ALT   TC+     LG++  + V+  +S  +   S L  N LA +N++     P N T       E+  FP+WV   +RKLLQ+     N +VA+DG+GN++T+ EAI AASG+ RFVIYVK GVY E +   K  + L GDG   TIITG  +   GT+   +AT    GDGFIAR I F NTAG   EQA+AL   SD +VFY+CS   YQDTLY  + RQFYRD D+
Sbjct:  122 SKLDAQTWLSTALTNLDTCRAGFLELGVT--DIVLPLMSNNV---SNLLCNTLA-INKV-----PFNYT-----PPEKDGFPSWVKPGDRKLLQSSTPKDNAVVAKDGSGNFKTIKEAIDAASGSGRFVIYVKQGVYSENLEIRKKNVMLRGDGIGKTIITGSKSVGGGTTTFNSATVAAVGDGFIARGITFRNTAGASNEQAVALRSGSDLSVFYQCSFEAYQDTLYVHSNRQFYRDCDV 346          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME_PRUPE (Pectinesterase/pectinesterase inhibitor PPE8B OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 3.307e-46
Identity = 111/250 (44.40%), Postives = 148/250 (59.20%), Query Frame = 3
Query:   45 NSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKE--KIRTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            NS  K   D++TWL AAL  Q TC +     G    N +++ +      L Q+TS    LV  +    +P     N       G  P+WV  K+RKLLQA  ++ + IVAQDGTGN+  V++A+ AA   S  R+VIY+K G YKE  +I+  K  + +IGDG   TII+G+ +   G +   +ATF ++G GFIARDI F NTAGP+  QA+AL   SD +VFYRC+I GYQDTLY   +RQFYRD  I
Sbjct:  119 NSTGKLSSDLRTWLSAALVNQDTCSN-----GFEGTNSIVQGLISAG--LGQVTS----LVQELLTQVHP-----NSNQQGPNGQIPSWVKTKDRKLLQADGVSVDAIVAQDGTGNFTNVTDAVLAAPDYSMRRYVIYIKRGTYKENVEIKKKKWNLMMIGDGMDATIISGNRSFVDGWTTFRSATFAVSGRGFIARDITFENTAGPEKHQAVALRSDSDLSVFYRCNIRGYQDTLYTHTMRQFYRDCKI 352          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME35_ARATH (Probable pectinesterase/pectinesterase inhibitor 35 OS=Arabidopsis thaliana GN=PME35 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.800e-45
Identity = 107/243 (44.03%), Postives = 149/243 (61.32%), Query Frame = 3
Query:   69 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAP--RINANVIVAQDGTGNYRTVSEAISAAS--GNRFVIYVKAGVYKEKIR--TNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            D+ TWL AALT Q+TCK S++    S   E I   S   +    LT++    V+   ++S   N T  R+L  +  DFP WVS+ +RKLL+A    +  + +VA DG+G + +V+EA+++      R VI++ AG YKE +   + +  + L+GDGK  T+I G  + R G +   +AT    GDGFIARDI F N+AGP  EQA+AL V SD +V YRCSI GYQD+LY L+ RQFYR+TDI
Sbjct:  131 DVHTWLSAALTNQETCKQSLSEKS-SFNKEGIAIDSFARNLTGLLTNSLDMFVSDKQKSSSSSNLTGGRKLLSDH-DFPTWVSSSDRKLLEASVEELRPHAVVAADGSGTHMSVAEALASLEKGSGRSVIHLTAGTYKENLNIPSKQKNVMLVGDGKGKTVIVGSRSNRGGWNTYQSATVAAMGDGFIARDITFVNSAGPNSEQAVALRVGSDRSVVYRCSIDGYQDSLYTLSKRQFYRETDI 371          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME3_PHAVU (Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 5.280e-44
Identity = 104/258 (40.31%), Postives = 151/258 (58.53%), Query Frame = 3
Query:   30 TISPQNSPTKNKHDIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRI-DRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAPRINA--NVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            T++ + + + +  +++TWL AALT Q TC D+V  L  +A    +++I   M   ++  SN LA+V +I    S  +   ++RRL      FP W+ A  R+LL+    ++  + +VA+DG+G ++T+ EA+      S  RF +YVK G Y E I  +K+   + + GDGK  T + G  N   GT    TATF + G GFIA+DIGF N AG    QA+AL   SD +VF+RCS  G+QDTLYA + RQFYRD DI
Sbjct:  164 TVAGRIASSASVSNVETWLSAALTDQDTCLDAVGELNSTAARGALQEIETAMRNSTEFASNSLAIVTKILGLLSRFETPIHHRRLL----GFPEWLGAAERRLLEEKNNDSTPDAVVAKDGSGQFKTIGEALKLVKKKSEERFSVYVKEGRYVENIDLDKNTWNVMIYGDGKDKTFVVGSRNFMDGTPTFETATFAVKGKGFIAKDIGFVNNAGASKHQAVALRSGSDRSVFFRCSFDGFQDTLYAHSNRQFYRDCDI 417          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME23_ARATH (Probable pectinesterase/pectinesterase inhibitor 23 OS=Arabidopsis thaliana GN=PME23 PE=2 SV=3)

HSP 1 Score: 177.563 bits (449), Expect = 6.896e-44
Identity = 103/256 (40.23%), Postives = 148/256 (57.81%), Query Frame = 3
Query:   69 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNST--------YNRRLDEEQGDFPNWVSAKNRKLLQAPR-----INANVIVAQDGTGNYRTVSEAISAA-SGNR--FVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPG-TATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            D++ WL  ++ FQQTC DS   +  +   +++K      +    L+SN LA+V RI       N T        Y R+L   +   P WV  + R+L+ A       + AN +VAQDGTG ++T+++A++A   GN+  F+I++K G+YKEK+   K    +T IGDG   T+ITG  N   G      TAT TI GD F A++IG  NTAGP+G QA+AL V++D+ VF+ C I G+QDTLY  + RQFYRD  +
Sbjct:  151 DLRVWLSGSIAFQQTCMDSFGEIKSNLMQDMLKIFKTSRE----LSSNSLAMVTRISTLIPNSNLTGLTGALAKYARKLLSTEDSIPTWVGPEARRLMAAQGGGPGPVKANAVVAQDGTGQFKTITDALNAVPKGNKVPFIIHIKEGIYKEKVTVTKKMPHVTFIGDGPNKTLITGSLNFGIGKVKTFLTATITIEGDHFTAKNIGIENTAGPEGGQAVALRVSADYAVFHSCQIDGHQDTLYVHSHRQFYRDCTV 402          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME22_ARATH (Putative pectinesterase/pectinesterase inhibitor 22 OS=Arabidopsis thaliana GN=PME22 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.896e-44
Identity = 108/245 (44.08%), Postives = 150/245 (61.22%), Query Frame = 3
Query:   69 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQA--PRI-NANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKI--RTNKDGITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            +++TWL AA++ Q TC +     G   + E + K S +   ++QL SN L +  +++  + P  ++ N  +       P W++  +  L+    P + + N +VA DG G YRT++EAI+ A   S  R+VIYVK GVYKE I  +  K  I L+GDG   TIITGD N  +G +   TAT  ++G GFIA+DI F NTAGPQ  QA+AL V SD + FYRCS+ GYQDTLYA +LRQFYRD +I
Sbjct:  150 NLKTWLSAAMSNQDTCLEGFE--GTERKYEELIKGSLRQ--VTQLVSNVLDMYTQLN--ALPFKASRNESVIAS----PEWLTETDESLMMRHDPSVMHPNTVVAIDGKGKYRTINEAINEAPNHSTKRYVIYVKKGVYKENIDLKKKKTNIMLVGDGIGQTIITGDRNFMQGLTTFRTATVAVSGRGFIAKDITFRNTAGPQNRQAVALRVDSDQSAFYRCSVEGYQDTLYAHSLRQFYRDCEI 384          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME18_ARATH (Pectinesterase/pectinesterase inhibitor 18 OS=Arabidopsis thaliana GN=PME18 PE=1 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.006e-43
Identity = 105/246 (42.68%), Postives = 150/246 (60.98%), Query Frame = 3
Query:   69 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYLSQLTSNPLALVNRIDRASYPKNSTYNRRLDEEQGDFPNWVSAKNRKLLQAP----RINANVIVAQDGTGNYRTVSEAISAA---SGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPGTATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            ++ TWL + LT   TC +S++ + ++++ +++K   Q  D +S+        V+ +      K    NR        FP+W++A +RKLL++     ++ ANV+VA+DGTG ++TV+EA++AA   S  R+VIYVK GVYKE I   K    + L+GDGK  TIITG  N   G++   +AT    GDGF+A+DI F NTAGP   QA+AL V++D TV  RC I  YQDTLY   LRQFYRD+ I
Sbjct:  156 NVHTWLSSVLTNYMTCLESISDVSVNSK-QIVKP--QLEDLVSRARVALAIFVSVLPARDDLKMIISNR--------FPSWLTALDRKLLESSPKTLKVTANVVVAKDGTGKFKTVNEAVAAAPENSNTRYVIYVKKGVYKETIDIGKKKKNLMLVGDGKDATIITGSLNVIDGSTTFRSATVAANGDGFMAQDIWFQNTAGPAKHQAVALRVSADQTVINRCRIDAYQDTLYTHTLRQFYRDSYI 390          
BLAST of CX288388 vs. ExPASy Swiss-Prot
Match: PME58_ARATH (Probable pectinesterase/pectinesterase inhibitor 58 OS=Arabidopsis thaliana GN=PME58 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 3.423e-43
Identity = 106/256 (41.41%), Postives = 143/256 (55.86%), Query Frame = 3
Query:   69 DIQTWLGAALTFQQTCKDSVNSLGLSARNEVIKKISQKMDYL----SQLTSNPLALVNRIDRASYPKNST--------YNRRLDEEQGDFPNWVSAKNRKLLQAPR-INANVIVAQDGTGNYRTVSEAISA---ASGNRFVIYVKAGVYKEKIRTNKD--GITLIGDGKYTTIITGDDNARRGTSMPG-TATFTITGDGFIARDIGFHNTAGPQGEQALALNVASDHTVFYRCSIAGYQDTLYALALRQFYRDTDI 779
            D++ WL  ++ +QQTC D+          E   K+SQ M  +     +LTSN LA++  I       N T        Y R+L   +   P+WV    R+L+     + ANV+VA DG+G Y+T++EA++A   A+   FVIY+K GVY EK+   K    +T IGDG   T ITG  N   G      TAT  I GD F A++IGF NTAGP+G QA+AL V++D  VFY C I GYQDTLY  + RQF+RD  +
Sbjct:  157 DLRVWLSGSIAYQQTCMDTFE--------ETNSKLSQDMQKIFKTSRELTSNGLAMITNISNLLGEFNVTGVTGDLGKYARKLLSAEDGIPSWVGPNTRRLMATKGGVKANVVVAHDGSGQYKTINEALNAVPKANQKPFVIYIKQGVYNEKVDVTKKMTHVTFIGDGPTKTKITGSLNYYIGKVKTYLTATVAINGDNFTAKNIGFENTAGPEGHQAVALRVSADLAVFYNCQIDGYQDTLYVHSHRQFFRDCTV 404          
The following BLAST results are available for this feature:
BLAST of CX288388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
PME54_ARATH4.919e-5851.46Probable pectinesterase/pectinesterase inhibitor 5... [more]
PME2_CITSI6.664e-4744.53Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME17_ARATH1.939e-4646.47Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME_PRUPE3.307e-4644.40Pectinesterase/pectinesterase inhibitor PPE8B OS=P... [more]
PME35_ARATH2.800e-4544.03Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME3_PHAVU5.280e-4440.31Pectinesterase 3 OS=Phaseolus vulgaris GN=MPE3 PE=... [more]
PME23_ARATH6.896e-4440.23Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME22_ARATH6.896e-4444.08Putative pectinesterase/pectinesterase inhibitor 2... [more]
PME18_ARATH2.006e-4342.68Pectinesterase/pectinesterase inhibitor 18 OS=Arab... [more]
PME58_ARATH3.423e-4341.41Probable pectinesterase/pectinesterase inhibitor 5... [more]

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Properties
Property NameValue
Genbank descriptionC01019H08SK Veg1 Citrus clementina cDNA clone C01019H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288388 ID=CX288388; Name=CX288388; organism=Citrus clementina; type=EST; length=781bp
GGATTCGGCCGAGGAACGGCTAGAGAATCACTATTAGCCCTCAAAATTCC
CCAACAAAAAACAAGCATGACATCCAAACGTGGCTCGGCGCTGCGTTGAC
TTTCCAGCAAACTTGTAAAGACTCTGTGAATAGCCTCGGTCTCTCAGCGA
GAAATGAGGTTATCAAAAAAATATCTCAAAAAATGGATTATTTGTCTCAA
CTGACCAGTAATCCTTTAGCCCTTGTCAACAGGATAGACAGGGCTAGTTA
CCCAAAGAACAGCACATATAATCGGCGTCTAGATGAGGAACAAGGTGATT
TTCCCAACTGGGTATCGGCGAAAAATAGGAAACTGCTGCAGGCCCCGCGC
ATAAATGCAAATGTGATTGTGGCTCAAGATGGAACTGGCAATTATAGAAC
TGTTTCGGAAGCTATCAGTGCTGCTTCTGGAAATCGTTTTGTGATTTATG
TGAAGGCAGGTGTTTATAAGGAGAAAATTCGAACTAACAAGGACGGTATT
ACTTTGATAGGAGATGGCAAATACACTACTATTATTACTGGTGATGATAA
TGCTCGTAGAGGCACTTCCATGCCTGGCACCGCCACTTTCACAATCACAG
GTGATGGATTTATCGCACGAGATATCGGATTTCATAACACAGCAGGACCC
CAAGGAGAGCAAGCATTAGCTCTAAACGTAGCCTCAGATCATACGGTCTT
TTACAGGTGCAGCATTGCAGGCTACCAAGACACACTATACGCCCTCGCTC
TGCGTCAGTTCTACAGAGACACCGACATCTA
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