CX288393

Overview
NameCX288393
Unique NameCX288393
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length328
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12135 contig Ccv1_Contig12135:683..1010. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_SOLTU (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Solanum tuberosum GN=GDCSP PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.610e-53
Identity = 98/103 (95.15%), Postives = 102/103 (99.03%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNINIEELRKAAEAN+DNL+ LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct:  656 HHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEELRKAAEANKDNLAALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 758
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_FLAAN (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria anomala GN=GDCSP PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.120e-53
Identity = 96/103 (93.20%), Postives = 102/103 (99.03%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEELRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct:  655 HHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEELRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 757
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSPB_FLAPR (Glycine dehydrogenase [decarboxylating] B, mitochondrial OS=Flaveria pringlei GN=GDCSPB PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.120e-53
Identity = 96/103 (93.20%), Postives = 102/103 (99.03%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEELRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct:  655 HHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEELRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 757
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSPA_FLAPR (Glycine dehydrogenase [decarboxylating] A, mitochondrial OS=Flaveria pringlei GN=GDCSPA PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 6.120e-53
Identity = 96/103 (93.20%), Postives = 102/103 (99.03%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEELRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct:  658 HHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEELRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 760
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_FLATR (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Flaveria trinervia GN=GDCSPA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 3.037e-52
Identity = 95/103 (92.23%), Postives = 101/103 (98.06%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHR VCIIPVSAHGTNPA+AAMCGMKI++VGTD+KGNINIEELRKAAEAN++NLS LMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct:  655 HHRKVCIIPVSAHGTNPASAAMCGMKIITVGTDSKGNINIEELRKAAEANKENLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 757
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP2_ARATH (Glycine dehydrogenase [decarboxylating] 2, mitochondrial OS=Arabidopsis thaliana GN=At4g33010 PE=1 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 5.181e-52
Identity = 94/103 (91.26%), Postives = 101/103 (98.06%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHRNVCIIPVSAHGTNPA+AAMCGMKI++VGTDAKGNINIEE+RKAAEAN+DNL+ LMVTYPSTHGVYEEGIDEIC IIH+NGGQVYMDGANMNAQVGLTSPG
Sbjct:  659 HHRNVCIIPVSAHGTNPASAAMCGMKIITVGTDAKGNINIEEVRKAAEANKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPG 761
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP1_ARATH (Glycine dehydrogenase [decarboxylating] 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSP PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 6.766e-52
Identity = 95/103 (92.23%), Postives = 100/103 (97.09%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHRNVCIIPVSAHGTNPA+AAMCGMKIV+VGTDAKGNINIEELR AAEAN+DNL+ LMVTYPSTHGVYEEGIDEIC IIH+NGGQVYMDGANMNAQVGLTSPG
Sbjct:  665 HHRNVCIIPVSAHGTNPASAAMCGMKIVAVGTDAKGNINIEELRNAAEANKDNLAALMVTYPSTHGVYEEGIDEICNIIHENGGQVYMDGANMNAQVGLTSPG 767
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_PEA (Glycine dehydrogenase [decarboxylating], mitochondrial OS=Pisum sativum GN=GDCSP PE=1 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 8.271e-50
Identity = 91/103 (88.35%), Postives = 98/103 (95.15%), Query Frame = 3 
Query:   18 HHRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HHRNVCIIP SAHGTNPA+AAM GMKIV++GTDAKGNINIEEL+KAAE ++DNLS  MVTYPSTHGVYEEGID+ICKIIHDNGGQVYMDGANMNAQVGLTSPG
Sbjct:  677 HHRNVCIIPASAHGTNPASAAMVGMKIVTIGTDAKGNINIEELKKAAEKHKDNLSAFMVTYPSTHGVYEEGIDDICKIIHDNGGQVYMDGANMNAQVGLTSPG 779
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_PHOPR (Glycine dehydrogenase [decarboxylating] OS=Photobacterium profundum GN=gcvP PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.851e-39
Identity = 70/102 (68.63%), Postives = 87/102 (85.29%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSPG 326
            HRNVC+IP SAHGTNPA+AAM  MK+V VG D KGN+++E+L+   E +RDNLS +M+TYPSTHGVYEE + E+C ++HD GGQVY+DGANMNAQVGLT+PG
Sbjct:  593 HRNVCLIPSSAHGTNPASAAMVSMKVVVVGCDEKGNVDVEDLKVKIEKHRDNLSCIMITYPSTHGVYEEAVREVCDLVHDAGGQVYLDGANMNAQVGLTNPG 694
[Close]
BLAST of CX288393 vs. ExPASy Swiss-Prot
Match: GCSP_NEIMA (Glycine dehydrogenase [decarboxylating] OS=Neisseria meningitidis serogroup A GN=gcvP PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 3.851e-39
Identity = 70/101 (69.31%), Postives = 87/101 (86.14%), Query Frame = 3 
Query:   21 HRNVCIIPVSAHGTNPATAAMCGMKIVSVGTDAKGNINIEELRKAAEANRDNLSTLMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVGLTSP 323
            HRN+C+IP SAHGTNPATAAM G+K+V V TD  GN+NI++L+  AE +RD LS +M+TYPSTHGVYEEGI +IC+IIH+NGGQVYMDGAN+NAQ+G+  P
Sbjct:  584 HRNICLIPKSAHGTNPATAAMLGLKVVVVDTDEHGNVNIDDLKAKAEQHRDALSAIMITYPSTHGVYEEGIRDICRIIHENGGQVYMDGANLNAQIGIMQP 684
The following BLAST results are available for this feature:
BLAST of CX288393 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 368
Match NameE-valueIdentityDescription
GCSP_SOLTU1.610e-5395.15Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_FLAAN6.120e-5393.20Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSPB_FLAPR6.120e-5393.20Glycine dehydrogenase [decarboxylating] B, mitocho... [more]
GCSPA_FLAPR6.120e-5393.20Glycine dehydrogenase [decarboxylating] A, mitocho... [more]
GCSP_FLATR3.037e-5292.23Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP2_ARATH5.181e-5291.26Glycine dehydrogenase [decarboxylating] 2, mitocho... [more]
GCSP1_ARATH6.766e-5292.23Glycine dehydrogenase [decarboxylating] 1, mitocho... [more]
GCSP_PEA8.271e-5088.35Glycine dehydrogenase [decarboxylating], mitochond... [more]
GCSP_PHOPR3.851e-3968.63Glycine dehydrogenase [decarboxylating] OS=Photoba... [more]
GCSP_NEIMA3.851e-3969.31Glycine dehydrogenase [decarboxylating] OS=Neisser... [more]

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Properties
Property NameValue
Genbank descriptionC01020A02SK Veg1 Citrus clementina cDNA clone C01020A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288393 ID=CX288393; Name=CX288393; organism=Citrus clementina; type=EST; length=328bp
CGAGGGGCAAGAGGAGACATCACCGCAATGTGTGCATTATACCCGTGTCA
GCCCATGGGACAAATCCTGCTACTGCTGCCATGTGTGGAATGAAGATTGT
TTCTGTTGGAACTGATGCCAAGGGTAACATCAACATTGAAGAGTTAAGGA
AGGCCGCAGAAGCTAATAGGGACAACCTATCAACCCTTATGGTAACGTAC
CCTTCAACTCATGGAGTTTATGAAGAAGGTATTGATGAGATATGCAAGAT
AATTCACGATAATGGAGGTCAAGTATATATGGACGGGGCTAACATGAATG
CTCAGGTCGGTCTGACAAGCCCTGGTTA
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