CX288398

Overview
NameCX288398
Unique NameCX288398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12850 contig Ccv1_Contig12850:799..1520. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_ORYSJ (26S protease regulatory subunit 4 homolog OS=Oryza sativa subsp. japonica GN=TBP2 PE=2 SV=2)

HSP 1 Score: 356.681 bits (914), Expect = 7.288e-98
Identity = 183/198 (92.42%), Postives = 185/198 (93.43%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+LSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH DF            EGVPEGLYM
Sbjct:  251 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADELSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKEGVPEGLYM 448
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4A_ARATH (26S proteasome regulatory subunit 4 homolog A OS=Arabidopsis thaliana GN=RPT2A PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.121e-97
Identity = 182/198 (91.92%), Postives = 185/198 (93.43%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS+MTL++DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH DF            EGVPEGLYM
Sbjct:  246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLSEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHPDFKKAKEKVMFKKKEGVPEGLYM 443
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4B_ARATH (26S proteasome regulatory subunit 4 homolog B OS=Arabidopsis thaliana GN=RPT2B PE=2 SV=1)

HSP 1 Score: 353.984 bits (907), Expect = 4.724e-97
Identity = 182/198 (91.92%), Postives = 185/198 (93.43%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDA+SGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS+MTLA+DVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTH DF            EGVPEGLYM
Sbjct:  246 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDANSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHVDFKKAKEKVMFKKKEGVPEGLYM 443
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_DICDI (26S protease regulatory subunit 4 homolog OS=Dictyostelium discoideum GN=psmC1 PE=1 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 5.235e-88
Identity = 161/198 (81.31%), Postives = 179/198 (90.40%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVAD+ +PSIVFIDEIDAVGTKRYD+ SGGEREIQRTMLELLNQLDGFD+R DVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPDIKT+R+IF+IHT++M L++DVNLEEFVM+KD+ SGADIKAICTE+GLLALRERRM+VTHTDF             G PEGLYM
Sbjct:  242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADECAPSIVFIDEIDAVGTKRYDSQSGGEREIQRTMLELLNQLDGFDARTDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDIKTKRKIFEIHTAKMNLSEDVNLEEFVMSKDDLSGADIKAICTESGLLALRERRMRVTHTDFKKAKEKVLYRKTAGAPEGLYM 439
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 322.013 bits (824), Expect = 1.989e-87
Identity = 161/198 (81.31%), Postives = 177/198 (89.39%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++  PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L+E +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF            EG PEGLY+
Sbjct:  243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTEGTPEGLYL 440
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 321.627 bits (823), Expect = 2.598e-87
Identity = 162/198 (81.82%), Postives = 177/198 (89.39%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDAVGTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT+RRIF IHTSRMTLA+DVNL E +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF            EG PEGLY+
Sbjct:  242 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKEGTPEGLYL 439
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.393e-87
Identity = 160/198 (80.81%), Postives = 178/198 (89.90%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF            EG PEGLY+
Sbjct:  243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.393e-87
Identity = 160/198 (80.81%), Postives = 178/198 (89.90%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF            EG PEGLY+
Sbjct:  243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 321.242 bits (822), Expect = 3.393e-87
Identity = 160/198 (80.81%), Postives = 178/198 (89.90%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLRVVGSELIQKYLGDGPKLVRELFRVA++ +PSIVFIDEIDA+GTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDVKVI+ATNRIE+LDPAL+RPGRIDRKIEFPLPD KT++RIFQIHTSRMTLADDV L++ +M KD+ SGADIKAICTEAGL+ALRERRMKVT+ DF            EG PEGLY+
Sbjct:  243 TSATFLRVVGSELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQEGTPEGLYL 440
[Close]
BLAST of CX288398 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 1.092e-85
Identity = 159/198 (80.30%), Postives = 175/198 (88.38%), Query Frame = 3 
Query:   24 TSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFXXXXXXXXXXXXEGVPEGLYM 617
            TSATFLR+VGSELIQKYLGDGPK+VRELFRVA++ +PSIVFIDEIDAVGTKRYD++SGGEREIQRTMLELLNQLDGFDSRGDVKV++ATNRIESLDPAL+RPGRIDRKIEFPLPD KT+RRIFQIHTSRMTL  +VNLEEF+  KDE SGADIKA+CTEAGLLALRERRM+VT  DF            EG PE LY+
Sbjct:  246 TSATFLRIVGSELIQKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKKEGAPEELYL 443
The following BLAST results are available for this feature:
BLAST of CX288398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 379
Match NameE-valueIdentityDescription
PRS4_ORYSJ7.288e-9892.4226S protease regulatory subunit 4 homolog OS=Oryza... [more]
PRS4A_ARATH2.121e-9791.9226S proteasome regulatory subunit 4 homolog A OS=A... [more]
PRS4B_ARATH4.724e-9791.9226S proteasome regulatory subunit 4 homolog B OS=A... [more]
PRS4_DICDI5.235e-8881.3126S protease regulatory subunit 4 homolog OS=Dicty... [more]
PRS4_CHICK1.989e-8781.3126S protease regulatory subunit 4 OS=Gallus gallus... [more]
PRS4_DROME2.598e-8781.8226S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_RAT3.393e-8780.8126S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE3.393e-8780.8126S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN3.393e-8780.8126S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CAEEL1.092e-8580.30Probable 26S protease regulatory subunit 4 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionC01020A07SK Veg1 Citrus clementina cDNA clone C01020A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288398 ID=CX288398; Name=CX288398; organism=Citrus clementina; type=EST; length=722bp
GCTTGCAAGGCTGTGGCAAATTAACATCTGCAACTTTCTTGCGTGTTGTC
GGTAGTGAATTAATTCAGAAGTACTTGGGTGATGGACCAAAATTAGTAAG
GGAACTTTTCAGAGTTGCTGATGATCTGTCACCTTCTATCGTCTTCATTG
ATGAAATTGATGCAGTTGGTACGAAGAGGTATGATGCCCACTCAGGTGGC
GAACGTGAAATTCAGAGAACCATGTTGGAGCTGCTGAACCAGTTGGATGG
GTTTGATTCTAGAGGAGATGTCAAAGTAATTCTTGCAACGAACCGAATTG
AAAGCCTGGATCCAGCTTTACTTCGGCCAGGTCGAATAGATAGAAAGATT
GAATTTCCTCTTCCTGATATCAAGACTAGGAGACGTATCTTCCAGATTCA
CACATCAAGGATGACCTTGGCTGATGATGTCAACTTGGAAGAGTTTGTTA
TGACCAAAGATGAGTTCTCTGGAGCTGATATAAAGGCTATATGTACTGAA
GCTGGTTTGCTTGCTTTGAGAGAGCGCCGCATGAAGGTGACGCATACAGA
TTTTAAGAAAGCAAAGGAAAAGGTGATGTTCAAGAAGAAAGAAGGGGTGC
CAGAAGGGCTTTATATGTGAAAGACTTCATTGTTCTACATTTTACTGTTT
AGTTCATTTTGCTGTATTTCCAATTCACTGTTAGCACTTTCGAAGCGCAT
CTTGGGACTTTAACATTGTGTT
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