CX288415

Overview
NameCX288415
Unique NameCX288415
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3707 contig Ccv1_Contig3707:37..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURPH_ORYSJ (BURP domain-containing protein 17 OS=Oryza sativa subsp. japonica GN=BURP17 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.825e-29
Identity = 75/195 (38.46%), Postives = 117/195 (60.00%), Query Frame = 1
Query:  142 EVKIFFTLRDLKVGNKM--ALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGS---ETGFKTVTTKS--TSNTFQNYTILEVQEIPAS-KMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            ++ +FF  ++L+ G K+  AL+      + ++ FLPR +ADS PFS K+LP IL+   +   S  A  M  TL+ CE    K E K CATSLES++DF  S FG+   +     V +K+  +S+  Q+YT+  V+ +  + +++ACH  SYPYA++ C  H+TE   + ++ SLVG +G   +A++ CH DTS W
Sbjct:  359 DMALFFLEKNLQQGKKINNALHFANLLATTNSKFLPRGKADSIPFSSKELPEILDRFGVRPGSDDAAEMSATLQDCELPANKGEKKACATSLESIVDFVTSSFGASDVDAASTVVLSKAVESSSLAQDYTVSGVRRMAGTGQLIACHPESYPYAVFMC--HLTEATTRAYKASLVGKDGTAVEAVAVCHTDTSDW 551          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP6_ORYSJ (BURP domain-containing protein 6 OS=Oryza sativa subsp. japonica GN=BURP6 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.018e-28
Identity = 75/186 (40.32%), Postives = 103/186 (55.38%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSET--GFKTVTTKSTSNTFQNYTILEVQEIPAS--KMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTS 696
            +FF  +DL  G+KM L+      +  A  LPR  ADS PF+ ++LP IL   S+P  SP A AM  TL  CE  P   E K CATSLESM++FA S  G+       T   ++     Q Y +  V+ +P S   MVACH M+Y YA++GCH+         + V+L G +G  A+A++ACH D +
Sbjct:   27 VFFLEKDLFPGSKMTLHFTRA--TAGAALLPRGRADSVPFASEKLPEILSQLSVPAGSPAADAMRSTLAECEAAPQAGEAKRCATSLESMVEFAASSLGTRDVHAVSTEVDRAGPTPRQAYRVEAVRPVPVSGGDMVACHGMAYAYAVFGCHT----TTAAAYTVTLAGADGTKAEALAACHTDAA 206          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP3_ORYSJ (BURP domain-containing protein 3 OS=Oryza sativa subsp. japonica GN=BURP3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 4.970e-27
Identity = 74/192 (38.54%), Postives = 101/192 (52.60%), Query Frame = 1
Query:  145 VKIFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSE--TGFKTVTTKSTSNTFQNYTILEVQEIPA----SKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            V +FF  +DL  G  MA++           FLPR EAD+ PFS +++P IL   S+   S +A  M  TLR CE  P + E K CATSLESM+DFA S  G+       TV  K  S   Q YT+  V+   A     ++VACH   Y YA++ CH        + + VS+ G +G   +A++ CH DT+ W
Sbjct:  210 VALFFLEKDLHPGKTMAVHFTATTAGEK--FLPRSEADAMPFSSEKVPEILSRFSVKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTSHVRAASTVVGKEGSPE-QEYTVTAVKRAAAGGDQDQLVACHAEPYAYAVFACH---LTRATRAYAVSMAGRDGTGVEAVAVCHADTAGW 395          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP5_ORYSJ (BURP domain-containing protein 5 OS=Oryza sativa subsp. japonica GN=BURP5 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 8.773e-24
Identity = 64/161 (39.75%), Postives = 90/161 (55.90%), Query Frame = 1
Query:  235 FLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTT----KSTSNTFQNYTILEVQEI-PASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            FLPR EAD+ PFS K L  IL    +   S  A  +++TL  CE    K E K CATSLESM+DF  S  G+    K  +T    K      Q YT+   + +    +++ACH  SYPYA++ C  H+TE   + ++ SLVG +G   +A++ CH DT++W
Sbjct:  134 FLPRGEADAVPFSSKDLQEILARFGVRPGSVDASVVKNTLLECELPANKGEKKACATSLESMVDFVASSLGTR-DIKAASTFLVGKDGDTPAQEYTVTGARRMAETGQLIACHPESYPYAVFMC--HLTE-ATRAYKASLVGKDGAAVEAVAVCHTDTAEW 290          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: RD22_ARATH (Dehydration-responsive protein RD22 OS=Arabidopsis thaliana GN=RD22 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.954e-23
Identity = 67/188 (35.64%), Postives = 98/188 (52.13%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIED-HSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNT-FQNYTILE--VQEIPASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLDTSQW 702
            +FF  +DL  G +M +    ED +     FLPR EA++ PF  ++    L+  S+   S +A+ M+ T+  CE   +  E K CATSLESM+DF+ S  G        T  +  N   Q Y I    V+++   K V CH   YP+A++ CH  M   +  V+ V L G+NG  A A++ CH +TS W
Sbjct:  175 LFFLEKDLVRGKEMNVRFNAEDGYGGKTAFLPRGEAETVPFGSEKFSETLKRFSVEAGSEEAEMMKKTIEECEARKVSGEEKYCATSLESMVDFSVSKLGKYHVRAVSTEVAKKNAPMQKYKIAAAGVKKLSDDKSVVCHKQKYPFAVFYCHKAM---MTTVYAVPLEGENGMRAKAVAVCHKNTSAW 359          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP2_ORYSJ (BURP domain-containing protein 2 OS=Oryza sativa subsp. japonica GN=BURP2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.427e-23
Identity = 71/190 (37.37%), Postives = 97/190 (51.05%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKT-----CATSLESMLDFAGSIFGSETGFKT---VTTKSTSNTFQNYTILEVQ--EIPASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLD 690
            +FF  +DL  G+KM L+      +  A  LPR  ADS PF+ ++LP IL   SIP  SP A AM  TL +CE   I  E        CATSLESM++   S  G+         V  ++     Q Y +  V+   +P   MVACH M Y YA++G H          + V+L G +G +A+A++ACH D
Sbjct:   66 VFFLEKDLFPGSKMTLHFTRA--TAGAALLPRGRADSVPFASEKLPEILSQLSIPAGSPTADAMRSTLAVCEAARIASETAPKHKHYCATSLESMVELVASSLGTRDVHAVSTEVVNRAGPTPRQAYRVEAVRPVPVPGGDMVACHRMPYAYAVFGVHGIK----GAAYTVTLAGADGTMAEAVAACHGD 249          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: RAF1B_WHEAT (Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.699e-23
Identity = 68/187 (36.36%), Postives = 98/187 (52.41%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGS-ETGFKTVTTKSTSNTFQNYTILEVQEIPASKM-VACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISA-CHLDTSQW 702
            +FF    ++VG ++  + P    + +  FLPR+ ADS PF+   LP IL    I   S    +ME TLR CE+  I  E K CATSLE++++ A  + G+ +    T T        Q YT++ VQ +    + VACH  +YPY +Y CH   T   ++ + V + G  G  A  I+A CH DTS W
Sbjct:  141 VFFHEEAVRVGRRLPFHFPPATPA-ALGFLPRQVADSVPFTTAALPGILATFGIASDSTTVPSMEATLRACESPTIAGESKFCATSLEALVERAMGVLGTRDIRPVTSTLPRAGAPLQTYTVVAVQPVEGGPVFVACHDEAYPYTVYRCH---TTGPSRAYTVDMEGARGADAVTIAAVCHTDTSLW 323          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURPD_ORYSJ (BURP domain-containing protein 13 OS=Oryza sativa subsp. japonica GN=BURP13 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.822e-22
Identity = 63/189 (33.33%), Postives = 96/189 (50.79%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGSETGFKTVTTKSTSNT-FQNYTILEVQEIPASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGD-NGDIADAI---SACHLDTSQW 702
            +FF    ++VG ++  Y P    S +  FLPR  ADS PF+   LP +L L  +   + +A  M +TLR CE   +  E K CATSLE++++ A +  G+       +T        Q Y +  V  +  +  VACH  +YPY +Y CH   T    + + V + GD  GD  +A+   + CH +TS+W
Sbjct:  189 VFFHEEAVRVGERLPFYFPAATTS-ALGFLPRRVADSIPFTAAALPAVLALFGVAPDTAEAAGMRETLRTCEWPTLAGESKFCATSLEALVEGAMAALGTRDIAALASTLPRGGAPLQAYAVRAVLPVEGAGFVACHDQAYPYTVYRCH---TTGPARAYMVEMEGDGGGDGGEAVTVATVCHTNTSRW 373          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: RAF1A_WHEAT (Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.075e-21
Identity = 63/187 (33.69%), Postives = 94/187 (50.27%), Query Frame = 1
Query:  151 IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPIKDEIKTCATSLESMLDFAGSIFGS-ETGFKTVTTKSTSNTFQNYTILEVQEIPASKM-VACHYMSYPYAIYGCHSHMTENINKVFRVSLVG-DNGDIADAISACHLDTSQW 702
            +FF    ++VG ++    P    + +  FLPR+ ADS PF+   LP +L    +   S    +ME TLR CE+  I  E K CATSLE++++ A  + G+ +    T T        Q YT+  V+ +    + VACH  +YPY +Y CH   T   ++ + V + G   GD     + CH DTS W
Sbjct:  168 VFFHEEAVRVGKRLPFRFPPATPA-ALGFLPRQVADSVPFTTAALPGVLATFGVASDSATVASMEATLRACESPTIAGESKFCATSLEALVERAMEVLGTRDIRPVTSTLPRAGAPLQTYTVRSVRPVEGGPVFVACHDEAYPYTVYRCH---TTGPSRAYMVDMEGARGGDAVTIATVCHTDTSLW 350          
BLAST of CX288415 vs. ExPASy Swiss-Prot
Match: BURP8_ORYSJ (BURP domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=BURP8 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.186e-20
Identity = 67/200 (33.50%), Postives = 101/200 (50.50%), Query Frame = 1
Query:  127 DVNSSEVK---IFFTLRDLKVGNKMALYLPIEDHSNSAHFLPREEADSFPFSLKQLPYILELTSIPRVSPQAKAMEDTLRMCETDPI--KDEIKTCATSLESMLDFAGSIFGSE----TGFKTVTTKSTSNTFQNYTILEVQ---EIPASKMVACHYMSYPYAIYGCHSHMTENINKVFRVSLVGDNGDIADAISACHLD 690
            D +  EV    +FF  +DL  G+K+ L+         A  L R  AD+ PF+ ++LP IL   S+P  S  A+ M  TL  CE   +  +D+ K C TSLESM++FA +  G+        + + T +     Q YT+  V+    +    MV CH M Y YA++GCH+         + V+L G +G  A+A++ CH D
Sbjct:   86 DTDMDEVSTDAVFFLEKDLFPGSKITLHFT--RGGACAMVLLRGRADAIPFASEKLPEILTQLSVPAGSRAAEDMRTTLAECEAALLGARDQAKHCVTSLESMVEFAAASLGTRDIRAVSTEVIGTGAAETPRQEYTVEAVKPVVSVSGGNMVTCHGMPYAYAVFGCHT----TTATAYAVTLAGADGTRAEALATCHGD 279          
The following BLAST results are available for this feature:
BLAST of CX288415 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
BURPH_ORYSJ1.825e-2938.46BURP domain-containing protein 17 OS=Oryza sativa ... [more]
BURP6_ORYSJ2.018e-2840.32BURP domain-containing protein 6 OS=Oryza sativa s... [more]
BURP3_ORYSJ4.970e-2738.54BURP domain-containing protein 3 OS=Oryza sativa s... [more]
BURP5_ORYSJ8.773e-2439.75BURP domain-containing protein 5 OS=Oryza sativa s... [more]
RD22_ARATH1.954e-2335.64Dehydration-responsive protein RD22 OS=Arabidopsis... [more]
BURP2_ORYSJ7.427e-2337.37BURP domain-containing protein 2 OS=Oryza sativa s... [more]
RAF1B_WHEAT9.699e-2336.36Protein RAFTIN 1B OS=Triticum aestivum GN=RAFTIN1B... [more]
BURPD_ORYSJ2.822e-2233.33BURP domain-containing protein 13 OS=Oryza sativa ... [more]
RAF1A_WHEAT4.075e-2133.69Protein RAFTIN 1A OS=Triticum aestivum GN=RAFTIN1A... [more]
BURP8_ORYSJ1.186e-2033.50BURP domain-containing protein 8 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionC01020B12SK Veg1 Citrus clementina cDNA clone C01020B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288415 ID=CX288415; Name=CX288415; organism=Citrus clementina; type=EST; length=703bp
ATCCTTCTACAGCTCCTCCTCCTGTGCGCATACAGAAGCGGTGCCAGGGA
ATTGAGAGAGGAGTCTCTGCCTCAAATGGATGTTCAACTTCATCATATGC
ATATAGCTCATCATTCATCCCATGTGGACGTAAACTCAAGCGAGGTCAAG
ATATTCTTCACCTTGAGGGATCTAAAGGTAGGTAATAAAATGGCCCTCTA
TCTTCCAATTGAAGATCATTCAAATTCTGCTCACTTTTTGCCTAGAGAAG
AAGCTGATTCCTTTCCATTTTCATTGAAACAACTTCCTTATATTCTTGAA
TTAACCTCCATCCCACGCGTCTCACCGCAAGCCAAAGCCATGGAAGACAC
TCTCAGGATGTGTGAAACCGATCCCATCAAAGATGAAATCAAAACTTGTG
CTACCTCTTTAGAATCCATGCTTGATTTTGCTGGCAGCATCTTTGGCTCG
GAGACAGGTTTTAAAACTGTGACCACAAAGTCTACCAGTAATACTTTCCA
AAATTATACAATCCTAGAGGTGCAAGAGATCCCTGCTTCCAAGATGGTAG
CTTGTCATTACATGTCCTATCCTTATGCAATTTACGGCTGCCATAGCCAT
ATGACAGAGAACATCAACAAAGTATTCAGGGTTTCTCTGGTCGGTGACAA
TGGAGATATAGCTGACGCTATTTCAGCTTGTCATCTGGATACCTCTCAGT
GGA
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