CX288433

Overview
NameCX288433
Unique NameCX288433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length761
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288433 vs. ExPASy Swiss-Prot
Match: C1D_DANRE (Nuclear nucleic acid-binding protein C1D OS=Danio rerio GN=c1d PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.166e-12
Identity = 44/142 (30.99%), Postives = 78/142 (54.93%), Query Frame = 1
Query:  196 PDSVMDSLKKSLYNVEQVKAHLLKLISLSDPDVLAEMPPLERAQSLFLVAKATTTLYTLRLRCSGVHPDDHPVKSELERLSLYQDKLRRFIDLSKAPMRPSTTLNYQAATRFIEHSLPDLTHAQRKSMKGIARGEGPRIKYT 621
            P  + D+L     ++  V+  +  L+S+S  D L ++ PLE+A+   + A A  +++ + L   GV+P DHP+K ELER+  Y +K++   D  KA       ++ +AA+RF+ ++L D    +RK  K   + +G   K+T
Sbjct:   11 PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-----AHIDKEAASRFVRNALWDADDKKRKD-KTEHQQKGKHTKFT 146          
BLAST of CX288433 vs. ExPASy Swiss-Prot
Match: C1D_XENLA (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis GN=c1d PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.349e-11
Identity = 49/162 (30.25%), Postives = 80/162 (49.38%), Query Frame = 1
Query:  163 MEQCSKESKVIPDSVMDSLKKSLYNVEQVKAHLLKLISLSDPDVLAEMPPLERAQSLFLVAKATTTLYTLRLRCSGVHPDDHPVKSELERLSLYQDKLRRFIDLSKAPMRPSTTLNYQAATRFIEHSLPDLTHAQRKSMKGIARGEGPRIKYTDRSAQKKRK 648
            M   S  ++  P  + + L     +V  V   L K++S+S  ++L ++ PLE+A+   + A    +L+ + L   G++P +HPVK ELER+  Y ++++   D  KA       L+  AA RFI+H+L D T  +    K             D  A+KKRK
Sbjct:    1 MADQSLSTEEYPTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIYLTTQGINPKEHPVKEELERIRGYMNRVKEITDRKKA-----ARLDKGAARRFIKHALCDPTSEEAPPAK------------MDCKAKKKRK 145          
The following BLAST results are available for this feature:
BLAST of CX288433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
C1D_DANRE5.166e-1230.99Nuclear nucleic acid-binding protein C1D OS=Danio ... [more]
C1D_XENLA3.349e-1130.25Nuclear nucleic acid-binding protein C1D OS=Xenopu... [more]
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Properties
Property NameValue
Genbank descriptionC01020D06SK Veg1 Citrus clementina cDNA clone C01020D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288433 ID=CX288433; Name=CX288433; organism=Citrus clementina; type=EST; length=761bp
GAGGCCTCGTGCCGAATTCGGCACGAGGATTTGTTTCATCTTCAATCATT
CAGTTCAATCTCAAAAATCTCAATTTTTTCACTTCTTGTTGCTGAAGTTC
TCTTTTTTGAAGCATTGGTAGTACTCAAAAGAGAGTCTAAAACAGAGTTT
CAAAGCACAACAATGGAACAATGTTCAAAAGAAAGTAAAGTGATACCTGA
CTCGGTTATGGATTCATTGAAGAAATCTTTATACAACGTTGAACAAGTGA
AAGCCCATTTGCTTAAACTTATTTCACTATCAGACCCAGATGTGTTAGCA
GAAATGCCGCCTCTAGAACGGGCTCAGTCACTCTTCTTGGTCGCCAAAGC
CACCACAACTCTTTATACTTTGAGGTTGAGATGCAGTGGAGTTCACCCAG
ATGACCATCCTGTTAAATCTGAGCTTGAGAGATTGAGCTTGTATCAAGAC
AAACTTAGGCGGTTCATAGATTTAAGTAAAGCACCTATGCGGCCTTCCAC
CACCTTAAATTATCAGGCGGCAACTCGTTTTATTGAGCATTCTTTGCCAG
ACCTGACCCATGCACAGAGGAAAAGCATGAAGGGTATCGCTAGAGGAGAG
GGGCCAAGGATCAAATATACAGATAGAAGTGCCCAAAAGAAGAGGAAATT
TCAATCATCTGAAAAAATGTCTGTCCAGACTGCCGCCAAGGAATTTCTTG
AAAAGCATCACGTGAGCTTCTTGGTGATACTCAGATGGTTTCAGGGACTC
TACAAATGATG
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