CX288440

Overview
NameCX288440
Unique NameCX288440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14839 contig Ccv1_Contig14839:1..717. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288440 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.842e-22
Identity = 54/109 (49.54%), Postives = 67/109 (61.47%), Query Frame = 2 
Query:   62 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYD 388
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYD
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYD 98

HSP 2 Score: 27.335 bits (59), Expect = 1.842e-22
Identity = 10/11 (90.91%), Postives = 11/11 (100.00%), Query Frame = 1 
Query:  475 LYSGETRSKHH 507
            +YSGETRSKHH
Sbjct:  100 MYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of CX288440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN1.842e-2249.54Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionC01020E01SK Veg1 Citrus clementina cDNA clone C01020E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288440 ID=CX288440; Name=CX288440; organism=Citrus clementina; type=EST; length=736bp
CGAGGCCTCGTGCCGAATTCGGCACGAGGTAGAAACTAGCAGCTAAATTG
TAAATTTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCT
CAGCCTGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTT
AGCAGTCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGA
GGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACG
CCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTT
TCACCCCGGTAGCAATCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTG
ACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGCAACCAAATA
AAGGCTAAGAGGAAGGAGGAAAACGTGGCACTCTGTCTCATGGGCGCGTT
GAAATAGATCTTTGTCTTATTCAGCTTTACAGTGGGGAGACTAGGAGCAA
GCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGAT
GGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAGATAGTGTCGT
TTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATGCTATTTG
TATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAATGCTGCTGACTAA
AGTAAACTAAGACTGTGATGTTTTATATCATATATT
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