CX288457

Overview
NameCX288457
Unique NameCX288457
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length780
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288457 vs. ExPASy Swiss-Prot
Match: FBX6_ARATH (F-box only protein 6 OS=Arabidopsis thaliana GN=FBX6 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.005e-55
Identity = 114/213 (53.52%), Postives = 141/213 (66.20%), Query Frame = 1
Query:  124 GSFPPHNTDSC-------FLYFHSHQHQQLPEEQTHQLHRWCLPEVDDGAADDYYGFVMAAGKS-GSCKMLEPVXXXXXXXXXXERNRGKLAGSTSTAEA-MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHR 735
            GS PP ++ S        FL  H  Q+Q          + WCLP ++D +ADD    VMA GK  G  KMLE V          ER +GK           M+QEIW+EFP+DL+E V++RLP+ATFF+FR+VC+KWN+L+ S SFS+   ++PQ IPWFYTITHENVNSG +YDPSLKKWHHP I +LP K I+LP+ASAGGLVCFLDIGHR
Sbjct:   22 GSPPPPSSSSSLSSSSPSFLVLHHPQYQ----------NGWCLPCIEDTSADDCCDIVMAGGKRPGIFKMLETVKPPVKRTRK-ERTQGKSCTEVDEISGNMDQEIWQEFPQDLFEDVVSRLPMATFFQFRAVCRKWNALIDSDSFSRCFTELPQTIPWFYTITHENVNSGQVYDPSLKKWHHPIIPALPKKSIVLPMASAGGLVCFLDIGHR 223          
BLAST of CX288457 vs. ExPASy Swiss-Prot
Match: FBX13_ARATH (F-box only protein 13 OS=Arabidopsis thaliana GN=FBX13 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.081e-12
Identity = 41/130 (31.54%), Postives = 67/130 (51.54%), Query Frame = 1
Query:  358 NRGKLAGSTSTAEAMEQEIW---KEFP-----EDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSL--PTKMIILPVASAGGLVCF 717
            N G   G   + +  E  +     EFP     +D+ E V++ LP + FFR  SVC++W S   S SF   C+Q+P   PWF+ I +++ +S  ++D +   W +          +   +PVAS+GGL+C+
Sbjct:  101 NMGFSTGKRKSRDEEEDRVSFFASEFPMDDLNDDVLERVLSWLPTSCFFRMSSVCKRWKSSQTSKSFKLACSQIPTRDPWFFMIDNDSNSSSFVFDSTENSWKNLNRRDFLHHHRQDFIPVASSGGLLCY 230          
BLAST of CX288457 vs. ExPASy Swiss-Prot
Match: FBK77_ARATH (F-box/kelch-repeat protein At3g61590 OS=Arabidopsis thaliana GN=At3g61590 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.409e-12
Identity = 40/109 (36.70%), Postives = 63/109 (57.80%), Query Frame = 1
Query:  427 PEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCA--QVPQGIPWFYTITHENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCFLDIGHRTSMY 747
            P+DL E +++ LPIA+ FR  +VC++WN ++ S  F  + +   V Q  PW++  T  +  SG  YDP ++KW+   +  + T      VAS+ GLVCF+D   R  +Y
Sbjct:   44 PDDLLERILSFLPIASIFRAGTVCKRWNEIVSSRRFLCNFSNNSVSQR-PWYFMFTTTDDPSGYAYDPIIRKWYSFDLPCIETSNWF--VASSCGLVCFMDNDCRNKIY 149          
BLAST of CX288457 vs. ExPASy Swiss-Prot
Match: FK111_ARATH (F-box/kelch-repeat protein At5g15710 OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.663e-11
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 1
Query:  400 MEQEIWKEFPEDLYEAVIARLPIATFFRFRSVCQKWNSLLKSHSFSQHCAQVPQGIPWFYTI--THENVNSGAMYDPSLKKWHHPTISSLPTKMIILPVASAGGLVCF 717
            ME  IW   PEDL   ++AR+P    FR RSVC+KWN +L+ +SF +  + V    P   T       +   +++   LK W+    + LP     L V S+GGLVCF
Sbjct:   99 MEDGIWAMLPEDLLNEILARVPPFMIFRIRSVCKKWNLILQDNSFLKFHSNVSSHGPCLLTFWKNSPQIPQCSVFSLPLKTWYKIPFTFLPPWAFWL-VGSSGGLVCF 205          
The following BLAST results are available for this feature:
BLAST of CX288457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
FBX6_ARATH3.005e-5553.52F-box only protein 6 OS=Arabidopsis thaliana GN=FB... [more]
FBX13_ARATH1.081e-1231.54F-box only protein 13 OS=Arabidopsis thaliana GN=F... [more]
FBK77_ARATH2.409e-1236.70F-box/kelch-repeat protein At3g61590 OS=Arabidopsi... [more]
FK111_ARATH2.663e-1137.04F-box/kelch-repeat protein At5g15710 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionC01020F06SK Veg1 Citrus clementina cDNA clone C01020F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288457 ID=CX288457; Name=CX288457; organism=Citrus clementina; type=EST; length=780bp
CCGGGCTGCAGATTCGGCCGAGGGTGGGTTTTTGGCTTTCCGTCCGTCAG
AGTCCGGGGCATGGGAGAGCTGGCCATGCTTAGGCAGCTCATCGGTCAGC
TTCAGCAGTTCCTCCAACTCTACGGTTCTTTTCCTCCTCATAATACCGAT
TCCTGTTTCCTCTATTTTCACTCTCATCAACATCAACAACTGCCCGAAGA
ACAAACGCACCAGCTTCACAGATGGTGCTTGCCCGAAGTCGATGACGGTG
CTGCGGATGATTATTACGGTTTTGTGATGGCAGCTGGAAAATCTGGAAGC
TGTAAGATGTTGGAGCCTGTCAAACCTCCTCCTTCTAAGAGATCTCGAAA
GGAGCGGAACCGAGGAAAATTGGCTGGATCCACCAGTACAGCTGAGGCTA
TGGAACAAGAAATTTGGAAAGAGTTCCCAGAAGACCTTTATGAAGCTGTC
ATTGCACGACTTCCTATTGCCACCTTCTTTCGCTTCCGTTCAGTTTGCCA
GAAATGGAATTCCTTACTGAAATCACATAGTTTCTCTCAGCATTGTGCCC
AAGTCCCGCAAGGAATTCCCTGGTTTTATACCATTACTCATGAAAATGTG
AATTCTGGAGCCATGTATGATCCTTCCCTAAAGAAATGGCACCATCCTAC
TATATCTTCTCTGCCTACAAAGATGATCATCTTGCCAGTTGCTTCGGCTG
GNGGTCTAGTTTGCTTTCTTGACATTGGTCATCGGACTTCTATGTATGCA
CCCTTTACTCATCATTCAAGAATTGCAGCT
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