CX288460

Overview
NameCX288460
Unique NameCX288460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length630
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.750e-42
Identity = 79/110 (71.82%), Postives = 92/110 (83.64%), Query Frame = 2
Query:  125 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 454
            AEEGQVI CHTVE+WNEQLQKG   K LIVVDFTASWC PC+ ++P L+ELAKKLP V FLKVDVDELK+V  EWAVE+MPTF+  KEGK++ ++VGAKKDELQ  + KH
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDELQQTIAKH 112          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.304e-41
Identity = 78/111 (70.27%), Postives = 91/111 (81.98%), Query Frame = 2
Query:  122 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 454
            MAEEGQVI  HTV++WNE LQKGI  KKLIVVDFTASWC PCK ++   +ELAKK+P V FLKVDVDELKSV  +WAVEAMPTF+  KEGK++ ++VGAKKDELQ  + KH
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDELQQTIAKH 111          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.850e-40
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 2
Query:  125 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 454
            +EEGQVI+CHTVE+WNEQLQK   +K L+VVDFTASWC PC+ ++P  ++LAKKLP V+FLKVD DELKSV  +WA++AMPTF+  KEGK+L ++VGAKKDELQ  + KH
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDELQSTIAKH 112          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.199e-39
Identity = 73/111 (65.77%), Postives = 91/111 (81.98%), Query Frame = 2
Query:  125 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 457
            +EEGQV  CH VE WNE  +KG+  KKL+VVDFTASWC PC+ ++PIL+++AKK+P VIFLKVDVDELK+V  EW+VEAMPTFV  K+GK + R+VGAKK+ELQ  + KHA
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEELQQTIVKHA 119          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 6.158e-36
Identity = 70/114 (61.40%), Postives = 90/114 (78.95%), Query Frame = 2
Query:  122 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 463
            MAEE QVI+CHTV+ WNE+ QK   + KLIV+DFTASWC PC++++P +SELAKK P V F KVDVD+LK V EE+ VEAMP+FV+ KEG+ ++RIVGA+KDEL   +  HA +
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELLHKIAVHAPI 114          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.161e-34
Identity = 63/111 (56.76%), Postives = 88/111 (79.28%), Query Frame = 2
Query:  122 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKH 454
            MA EG+VI+CHT+E WNE+++    +KKLIV+DFTASWCPPC+ ++P+ +E+AKK   V+F K+DVDEL++V +E+ VEAMPTFV  KEG ++ R+VGA KDE+   + KH
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEINEKLMKH 111          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH3_ARATH (Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TRX3 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 4.413e-34
Identity = 64/114 (56.14%), Postives = 89/114 (78.07%), Query Frame = 2
Query:  122 MAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 463
            MA EG+VI+CHTVE W E+L+    +KKLIV+DFTA+WCPPC+ ++P+ ++LAKK   V+F KVDVDEL +V EE+ V+AMPTF+  KEG++ + +VGA K+E+   +EKH TV
Sbjct:    1 MAAEGEVIACHTVEDWTEKLKAANESKKLIVIDFTATWCPPCRFIAPVFADLAKKHLDVVFFKVDVDELNTVAEEFKVQAMPTFIFMKEGEIKETVVGAAKEEIIANLEKHKTV 114          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 140.969 bits (354), Expect = 4.879e-33
Identity = 64/108 (59.26%), Postives = 85/108 (78.70%), Query Frame = 2
Query:  134 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHA 457
            G+VIS H++E W  Q+++  AAKKL+V+DFTASWC PC++M+PI ++LAKK PA +FLKVDVDELK + E+++VEAMPTF+  KEG V  R+VGA K+EL   V  HA
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEELTTKVGLHA 125          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 6.373e-33
Identity = 66/114 (57.89%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  125 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 463
            AEEGQVI CHT + W  QL K   + KLIV+DFTASWCPPC++++PI ++LAKK + + IF KVDVDEL+SV +E+ VEAMPTFV  K G+V+ ++VGA K++LQ  + KH  V
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDLQAKIVKHTGV 116          
BLAST of CX288460 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 2.422e-32
Identity = 62/114 (54.39%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  125 AEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVVEEWAVEAMPTFVLTKEGKVLQRIVGAKKDELQLAVEKHATV 463
            AEEGQVI CH ++ W  QL     + KLIV+DFTASWCPPC++++P+ ++LAKK + + IF KVDVDEL++V +E+ VEAMPTFVL K+G V+ ++VGA+K++L   + KH  V
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDLHATIAKHTGV 116          
The following BLAST results are available for this feature:
BLAST of CX288460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
TRXH_RICCO5.750e-4271.82Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC8.304e-4170.27Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH1.850e-4066.36Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC1.199e-3965.77Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES6.158e-3661.40Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH1.161e-3456.76Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH3_ARATH4.413e-3456.14Thioredoxin H-type 3 OS=Arabidopsis thaliana GN=TR... [more]
TRXH_WHEAT4.879e-3359.26Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]
TRXH4_ARATH6.373e-3357.89Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA2.422e-3254.39Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]

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Properties
Property NameValue
Genbank descriptionC01020F09SK Veg1 Citrus clementina cDNA clone C01020F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288460 ID=CX288460; Name=CX288460; organism=Citrus clementina; type=EST; length=630bp
GAGGGGCGTGCTGCTCGCTATTTATAGAGATCCAAGATTGCAAGAGTTCC
GTCACCAAACACAGAAACAAATATAAAGAAATCAGAACAGAGAAGTAATT
TAACTTGTGATCATAATTAAGATGGCCGAGGAGGGACAAGTGATCAGCTG
CCACACTGTTGAATCCTGGAACGAGCAGCTCCAAAAGGGCATTGCGGCAA
AGAAACTGATAGTGGTGGATTTTACGGCTTCATGGTGCCCGCCATGCAAG
TTGATGTCTCCAATTTTGAGTGAATTGGCGAAGAAGCTGCCCGCTGTCAT
ATTCTTGAAGGTGGATGTTGATGAATTGAAGTCTGTCGTTGAGGAATGGG
CTGTGGAAGCCATGCCGACCTTTGTACTGACGAAAGAAGGCAAAGTCCTG
CAGAGGATTGTGGGAGCGAAGAAAGATGAGCTGCAGCTGGCTGTCGAAAA
GCACGCAACTGTTGAGAATGCAACTACTGCTAATGCTTGATTGATGCGTA
CATGAATCTCACTGGTCTTTTATTGTAAGATGTGTGTTTGTGGTTGCTTA
ATGTAAGAATATGGTACCATGTTTAACAGGCCTGTATATATGAATAAATG
ACAATCTTCTACCAAAAAAAAAAAAAAAAA
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