CX288468
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: YOCS_BACSU (Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis GN=yocS PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30 Identity = 69/186 (37.10%), Postives = 102/186 (54.84%), Query Frame = 2 Query: 113 IELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXXXXXXXXXXXXEDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLV 670 I I F IWV + +LG PS F W+ + +D + + P ++I G + QY++MP+ F ++ L+LP+ A G+ILVGCCPGGTASN++T++A+GN ALSV +T STL A V+TP L A +++ V LF+S LQ VL P++ G + +F V Sbjct: 4 IRKISHFAGQTFGIWVIVFAVLGFSFPSLFTWIS-SYITIFLGIIMFGMGLTLQADDFKELVRKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGNTALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQV 188
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_CRIGR (Ileal sodium/bile acid cotransporter OS=Cricetulus griseus GN=SLC10A2 PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14 Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 2 Query: 290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKL---AGQYV-AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679 G L P I+ GF+ Q+ +MP++GF++S + A +++ GCCPGGTASNI+ Y G++ LSV MT STL A+ M P F+ K+ +G V D++G ++L +++PV G ++N + K + Sbjct: 60 GHLRRPWGIVVGFLCQFGIMPLTGFVLSVAFGILPVQAVVVLIQGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIG---TSLVALVIPVSIGMYVNHKWPQKAKII 193
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_HUMAN (Ileal sodium/bile acid cotransporter OS=Homo sapiens GN=SLC10A2 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14 Identity = 44/134 (32.84%), Postives = 74/134 (55.22%), Query Frame = 2 Query: 290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL----FMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679 G + P I GF+ Q+ +MP++GF++S ++ A ++++GCCPGGTASNI+ Y G++ LSV MT STL A+ M P +V ++ + ++L +++PV G F+N + K + Sbjct: 60 GHIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFVNHKWPQKAKII 193
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_RAT (Ileal sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a2 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14 Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 2 Query: 290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKL---AGQYV-AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679 G + P I GF+ Q+ +MP++GF++S + A ++++GCCPGGT SNI+ Y G++ LSV MT STL A+ M P F+ K+ +G V D++G+ +L +++PV G F+N + K + Sbjct: 60 GHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGI---SLVALVIPVSIGMFVNHKWPQKAKII 193
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_MOUSE (Ileal sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a2 PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14 Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 2 Query: 290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKL---AGQYV-AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679 G + P I GF+ Q+ +MP++GF++S + A ++++GCCPGGT SNI+ Y G++ LSV MT STL A+ M P F+ K+ +G V D++G+ +L +++PV G F+N + K + Sbjct: 60 GHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFVYTKMWVDSGTIVIPYDSIGI---SLVALVIPVSFGMFVNHKWPQKAKII 193
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_RABIT (Ileal sodium/bile acid cotransporter OS=Oryctolagus cuniculus GN=SLC10A2 PE=2 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13 Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL----FMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679 G + P I GF+ Q+ +MP++GF+++ + A ++++GCCPGGTASNI+ Y G++ LSV MT STL A+ M P +V + + ++L +++PV G F+N + K + Sbjct: 61 GHIRRPWGIFIGFLCQFGIMPLTGFVLAVAFGIMPIQAVVVLIMGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLYVYTKMWVDSGTIVIPYDNIGTSLVALVVPVSIGMFVNHKWPQKAKII 194
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP_MOUSE (Sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a1 PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13 Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 2 Query: 305 PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA-GQYVA-----VDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679 PK +I V QY +MP+S FL+ K+ +L S A +++ GC PGG SN+ T +G++ LS++MT S+ +A+ M P L + G Y V G+ +S L +VL+P G FL V +V Sbjct: 58 PKGVIIAIVAQYGIMPLSAFLLGKVFHLTSIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFTALGMMPLLLYIYSKGIYDGDLKDKVPYKGIMLS-LVMVLIPCAIGIFLKSKRPHYVPYV 187
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP5_MOUSE (Sodium/bile acid cotransporter 5 OS=Mus musculus GN=Slc10a5 PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12 Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 2 Query: 305 PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKLAGQYVAVDAMGL-FMSTLQVVLLPVLGGAFLNQYFHS----LVKFVSPLMPPLLW 706 P I+ G V+Q+ +MP GFL+S++L LP A G ++ CPGG + + G+V L++LMT ST A++M P + ++L G A L +STL +L+P+ G + + L + V PL L++ Sbjct: 172 PLPILLGVVIQFFLMPFCGFLLSQILGLPKAQAFGFVMTCTCPGGGGGYLFALLLEGDVTLAILMTCTSTSLALIMMPVNSYFYSRLLGLAGAFHVPVLKIVSTLLFILMPMSTGVIIKHKMPAKAICLERVVRPLSLTLMF 313
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP5_HUMAN (Sodium/bile acid cotransporter 5 OS=Homo sapiens GN=SLC10A5 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12 Identity = 43/142 (30.28%), Postives = 69/142 (48.59%), Query Frame = 2 Query: 305 PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL----------FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPL 700 P +I G V Q+ +MP GFL+S+++ LP A G+++ CPGG + + G+ L++LMT STL A++M P Y+ +GL +STL +L+PV G + F+ ++ PL Sbjct: 174 PLPVILGAVTQFFLMPFCGFLLSQIVALPEAQAFGVVMTCTCPGGGGGYLFALLLDGDFTLAILMTCTSTLLALIMMP------VNSYIYSRILGLSGTFHIPVSKIVSTLLFILVPVSIGIVIKHRIPEKASFLERIIRPL 309
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP_RAT (Sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a1 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12 Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 2 Query: 284 LRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFL 544 ++ L PK +I V Q+ +MP++ FL+ K+ +L + A +++ GC PGG SN+ T +G++ LS++MT S+ SA+ M P L Sbjct: 51 IKAHLWKPKGVIVALVAQFGIMPLAAFLLGKIFHLSNIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFSALGMMPLL 137 The following BLAST results are available for this feature:
BLAST of CX288468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >CX288468 ID=CX288468; Name=CX288468; organism=Citrus clementina; type=EST; length=713bpback to top |