CX288468

Overview
NameCX288468
Unique NameCX288468
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: YOCS_BACSU (Uncharacterized sodium-dependent transporter yocS OS=Bacillus subtilis GN=yocS PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 69/186 (37.10%), Postives = 102/186 (54.84%), Query Frame = 2
Query:  113 IELIGELISTAFPIWVSLGCLLGLVKPSSFNWVQPKWXXXXXXXXXXXXXXXXXXEDLRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLV 670
            I  I       F IWV +  +LG   PS F W+   +                  +D +  +  P ++I G + QY++MP+  F ++  L+LP+  A G+ILVGCCPGGTASN++T++A+GN ALSV +T  STL A V+TP L    A +++ V    LF+S LQ VL P++ G  +  +F   V
Sbjct:    4 IRKISHFAGQTFGIWVIVFAVLGFSFPSLFTWIS-SYITIFLGIIMFGMGLTLQADDFKELVRKPWQVIIGVIAQYTIMPLVAFGLAFGLHLPAEIAVGVILVGCCPGGTASNVMTFLAKGNTALSVAVTTISTLLAPVVTPLLIMLFAKEWLPVSPGSLFISILQAVLFPIIAGLIVKMFFRKQV 188          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_CRIGR (Ileal sodium/bile acid cotransporter OS=Cricetulus griseus GN=SLC10A2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.192e-14
Identity = 49/137 (35.77%), Postives = 79/137 (57.66%), Query Frame = 2
Query:  290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKL---AGQYV-AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679
            G L  P  I+ GF+ Q+ +MP++GF++S    +    A  +++ GCCPGGTASNI+ Y   G++ LSV MT  STL A+ M P   F+  K+   +G  V   D++G   ++L  +++PV  G ++N  +    K +
Sbjct:   60 GHLRRPWGIVVGFLCQFGIMPLTGFVLSVAFGILPVQAVVVLIQGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIG---TSLVALVIPVSIGMYVNHKWPQKAKII 193          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_HUMAN (Ileal sodium/bile acid cotransporter OS=Homo sapiens GN=SLC10A2 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.740e-14
Identity = 44/134 (32.84%), Postives = 74/134 (55.22%), Query Frame = 2
Query:  290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL----FMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679
            G +  P  I  GF+ Q+ +MP++GF++S   ++    A  ++++GCCPGGTASNI+ Y   G++ LSV MT  STL A+ M P         +V   ++ +      ++L  +++PV  G F+N  +    K +
Sbjct:   60 GHIKRPWGICVGFLCQFGIMPLTGFILSVAFDILPLQAVVVLIIGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLLIYTKMWVDSGSIVIPYDNIGTSLVALVVPVSIGMFVNHKWPQKAKII 193          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_RAT (Ileal sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a2 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKL---AGQYV-AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679
            G +  P  I  GF+ Q+ +MP++GF++S    +    A  ++++GCCPGGT SNI+ Y   G++ LSV MT  STL A+ M P   F+  K+   +G  V   D++G+   +L  +++PV  G F+N  +    K +
Sbjct:   60 GHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFIYTKMWVDSGTIVIPYDSIGI---SLVALVIPVSIGMFVNHKWPQKAKII 193          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_MOUSE (Ileal sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 6.379e-14
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 2
Query:  290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKL---AGQYV-AVDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679
            G +  P  I  GF+ Q+ +MP++GF++S    +    A  ++++GCCPGGT SNI+ Y   G++ LSV MT  STL A+ M P   F+  K+   +G  V   D++G+   +L  +++PV  G F+N  +    K +
Sbjct:   60 GHIKRPWGIFVGFLCQFGIMPLTGFILSVASGILPVQAVVVLIMGCCPGGTGSNILAYWIDGDMDLSVSMTTCSTLLALGMMPLCLFVYTKMWVDSGTIVIPYDSIGI---SLVALVIPVSFGMFVNHKWPQKAKII 193          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP2_RABIT (Ileal sodium/bile acid cotransporter OS=Oryctolagus cuniculus GN=SLC10A2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.856e-13
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  290 GALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL----FMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679
            G +  P  I  GF+ Q+ +MP++GF+++    +    A  ++++GCCPGGTASNI+ Y   G++ LSV MT  STL A+ M P         +V    + +      ++L  +++PV  G F+N  +    K +
Sbjct:   61 GHIRRPWGIFIGFLCQFGIMPLTGFVLAVAFGIMPIQAVVVLIMGCCPGGTASNILAYWVDGDMDLSVSMTTCSTLLALGMMPLCLYVYTKMWVDSGTIVIPYDNIGTSLVALVVPVSIGMFVNHKWPQKAKII 194          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP_MOUSE (Sodium/bile acid cotransporter OS=Mus musculus GN=Slc10a1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.400e-13
Identity = 47/131 (35.88%), Postives = 71/131 (54.20%), Query Frame = 2
Query:  305 PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLA-GQYVA-----VDAMGLFMSTLQVVLLPVLGGAFLNQYFHSLVKFV 679
            PK +I   V QY +MP+S FL+ K+ +L S  A  +++ GC PGG  SN+ T   +G++ LS++MT  S+ +A+ M P L    + G Y       V   G+ +S L +VL+P   G FL       V +V
Sbjct:   58 PKGVIIAIVAQYGIMPLSAFLLGKVFHLTSIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFTALGMMPLLLYIYSKGIYDGDLKDKVPYKGIMLS-LVMVLIPCAIGIFLKSKRPHYVPYV 187          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP5_MOUSE (Sodium/bile acid cotransporter 5 OS=Mus musculus GN=Slc10a5 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 46/142 (32.39%), Postives = 74/142 (52.11%), Query Frame = 2
Query:  305 PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTP---FLTAKLAGQYVAVDAMGL-FMSTLQVVLLPVLGGAFLNQYFHS----LVKFVSPLMPPLLW 706
            P  I+ G V+Q+ +MP  GFL+S++L LP   A G ++   CPGG    +   +  G+V L++LMT  ST  A++M P   +  ++L G   A     L  +STL  +L+P+  G  +     +    L + V PL   L++
Sbjct:  172 PLPILLGVVIQFFLMPFCGFLLSQILGLPKAQAFGFVMTCTCPGGGGGYLFALLLEGDVTLAILMTCTSTSLALIMMPVNSYFYSRLLGLAGAFHVPVLKIVSTLLFILMPMSTGVIIKHKMPAKAICLERVVRPLSLTLMF 313          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP5_HUMAN (Sodium/bile acid cotransporter 5 OS=Homo sapiens GN=SLC10A5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 43/142 (30.28%), Postives = 69/142 (48.59%), Query Frame = 2
Query:  305 PKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFLTAKLAGQYVAVDAMGL----------FMSTLQVVLLPVLGGAFLNQYFHSLVKFVSPLMPPL 700
            P  +I G V Q+ +MP  GFL+S+++ LP   A G+++   CPGG    +   +  G+  L++LMT  STL A++M P         Y+    +GL           +STL  +L+PV  G  +         F+  ++ PL
Sbjct:  174 PLPVILGAVTQFFLMPFCGFLLSQIVALPEAQAFGVVMTCTCPGGGGGYLFALLLDGDFTLAILMTCTSTLLALIMMP------VNSYIYSRILGLSGTFHIPVSKIVSTLLFILVPVSIGIVIKHRIPEKASFLERIIRPL 309          
BLAST of CX288468 vs. ExPASy Swiss-Prot
Match: NTCP_RAT (Sodium/bile acid cotransporter OS=Rattus norvegicus GN=Slc10a1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 32/87 (36.78%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  284 LRGALAMPKEIISGFVLQYSVMPISGFLVSKLLNLPSHYAAGLILVGCCPGGTASNIVTYIARGNVALSVLMTAASTLSAVVMTPFL 544
            ++  L  PK +I   V Q+ +MP++ FL+ K+ +L +  A  +++ GC PGG  SN+ T   +G++ LS++MT  S+ SA+ M P L
Sbjct:   51 IKAHLWKPKGVIVALVAQFGIMPLAAFLLGKIFHLSNIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFSALGMMPLL 137          
The following BLAST results are available for this feature:
BLAST of CX288468 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
YOCS_BACSU6.349e-3037.10Uncharacterized sodium-dependent transporter yocS ... [more]
NTCP2_CRIGR2.192e-1435.77Ileal sodium/bile acid cotransporter OS=Cricetulus... [more]
NTCP2_HUMAN3.740e-1432.84Ileal sodium/bile acid cotransporter OS=Homo sapie... [more]
NTCP2_RAT6.379e-1435.04Ileal sodium/bile acid cotransporter OS=Rattus nor... [more]
NTCP2_MOUSE6.379e-1435.04Ileal sodium/bile acid cotransporter OS=Mus muscul... [more]
NTCP2_RABIT1.856e-1332.09Ileal sodium/bile acid cotransporter OS=Oryctolagu... [more]
NTCP_MOUSE5.400e-1335.88Sodium/bile acid cotransporter OS=Mus musculus GN=... [more]
NTCP5_MOUSE1.571e-1232.39Sodium/bile acid cotransporter 5 OS=Mus musculus G... [more]
NTCP5_HUMAN4.571e-1230.28Sodium/bile acid cotransporter 5 OS=Homo sapiens G... [more]
NTCP_RAT5.970e-1236.78Sodium/bile acid cotransporter OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionC01020G05SK Veg1 Citrus clementina cDNA clone C01020G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288468 ID=CX288468; Name=CX288468; organism=Citrus clementina; type=EST; length=713bp
GAGGCTCGAACCCCGAAAACCCAATTTTAGACTCACTAACTTTGGCCCTC
TTCATTGCGGCATTTCATCGAACACCGCTGACGCTAATAACAGCCGGAGT
TTTCGGGAATGGATTGAGTTAATTGGTGAATTGATATCAACTGCCTTTCC
GATATGGGTATCTTTGGGTTGCTTATTGGGTTTGGTCAAGCCAAGTTCCT
TCAACTGGGTCCAGCCAAAATGGACAATTATTGGCCTTACTCTCACCATG
CTCGGTATGGGAATGACTCTCACTCTTGAAGATCTTCGTGGCGCTTTGGC
CATGCCCAAGGAAATCATTTCTGGCTTTGTGCTTCAGTATTCGGTGATGC
CAATATCAGGATTTCTTGTTAGTAAGCTCTTGAATCTACCATCTCATTAT
GCAGCTGGTTTAATATTGGTTGGGTGTTGCCCTGGTGGTACAGCAAGCAA
CATTGTCACTTACATTGCACGTGGAAATGTAGCACTTTCAGTGTTGATGA
CAGCCGCAAGCACTCTCTCTGCTGTGGTCATGACCCCCTTCCTTACAGCC
AAACTTGCTGGACAATATGTTGCGGTAGATGCTATGGGTTTGTTTATGTC
CACATTGCAAGTTGTGCTTCTTCCTGTACTGGGCGGTGCATTTCTAAATC
AATATTTCCATAGCTTGGTTAAGTTTGTCTCTCCCTTGATGCCACCATTG
CTGTGGGAACGTT
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