CX288472

Overview
NameCX288472
Unique NameCX288472
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288472 vs. ExPASy Swiss-Prot
Match: BCB1_ARATH (Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.237e-17
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 2
Query:  158 WIVPTSADYYTNWISNKTFEVGDSVMFNWST-THNVADVSKSEYDDCSKTSSVVASH----PVQIQLNSTGSRYFICTVDDHCGRGQKLAITVKNSG 433
            W  P   ++YT W + KTF VGD + F+++   H+VA VS++ +++C K   +  SH    PV+I LN+TG +YFICTV DHC  GQKL+ITV  +G
Sbjct:   33 WTRPMDPEFYTTWATGKTFRVGDELEFDFAAGRHDVAVVSEAAFENCEKEKPI--SHMTVPPVKIMLNTTGPQYFICTVGDHCRFGQKLSITVVAAG 127          
BLAST of CX288472 vs. ExPASy Swiss-Prot
Match: UMEC_ARMRU (Umecyanin OS=Armoracia rusticana PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 42/104 (40.38%), Postives = 65/104 (62.50%), Query Frame = 2
Query:  152 LHWIVPTSADYYTNWISNKTFEVGDSVMFNWST-THNVADVSKSEYDDCSKTSSV--VASHPVQIQLNSTGSRYFICTVDDHCGRGQKLAITVKNSGNDTSSAS 454
            + W  P+   +Y  W + KTF VGD + F+++   H+VA V+K  +D+C K + +  + + PV+I LN+TG +Y+ICTV DHC  GQKL+I V  +G     A+
Sbjct:    9 MEWKRPSDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGGAGGGAT 112          
BLAST of CX288472 vs. ExPASy Swiss-Prot
Match: CPC_CUCSA (Cucumber peeling cupredoxin OS=Cucumis sativus PE=1 SV=3)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 40/93 (43.01%), Postives = 59/93 (63.44%), Query Frame = 2
Query:  158 WIVPTSADYYTNWISNKTFEVGDSVMFNW-STTHNVADV-SKSEYDDCSKTSS---VVASHPVQIQLNSTGSRYFICTVDDHCGRGQKLAITV 421
            W VP+S ++Y+ W + KTF VGDS+ FN+ +  HNV ++ +K  +D C+  +S   V  + PV  +L+  G  YF+CTV  HC  GQKL+I V
Sbjct:   13 WSVPSSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 105          
BLAST of CX288472 vs. ExPASy Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 2
Query:  185 YTNWISNKTFEVGDSVMFNWST-THNVADVSKSEYDDCSKTSSVV--ASHPVQIQLNSTGSRYFICTVDDHCGRGQKLAITVKNSGNDTSSAS 454
            Y+ W S+KTF VGDS++FN+    H V +V +S+Y  C+  +S+   ++    I L   G  YFIC V  H   G KL+I VK S   +++ S
Sbjct:   41 YSTWASDKTFAVGDSLVFNYGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLSIKVKASSGSSAAPS 133          
BLAST of CX288472 vs. ExPASy Swiss-Prot
Match: STEL_RHUVE (Stellacyanin OS=Rhus vernicifera PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 35/93 (37.63%), Postives = 51/93 (54.84%), Query Frame = 2
Query:  158 WIVPT--SADYYTNWISNKTFEVGDSVMFNWSTT-HNVADVSKSEYDDCSKTSSVVASHPV--QIQLNSTGSRYFICTVDDHCGRGQKLAITV 421
            W VP     DY   W SNKTF +GD ++F +    HNV  V++  Y  C+ T+ + + +    +I L + G +Y+IC V  HC  GQK+ I V
Sbjct:   11 WKVPFFGDVDYDWKWASNKTFHIGDVLVFKYDRRFHNVDKVTQKNYQSCNDTTPIASYNTGBBRINLKTVGQKYYICGVPKHCDLGQKVHINV 103          
The following BLAST results are available for this feature:
BLAST of CX288472 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
BCB1_ARATH1.237e-1746.39Blue copper protein OS=Arabidopsis thaliana GN=BCB... [more]
UMEC_ARMRU3.599e-1740.38Umecyanin OS=Armoracia rusticana PE=1 SV=1[more]
CPC_CUCSA7.505e-1543.01Cucumber peeling cupredoxin OS=Cucumis sativus PE=... [more]
BCP_PEA2.260e-1138.71Blue copper protein OS=Pisum sativum PE=2 SV=1[more]
STEL_RHUVE8.587e-1137.63Stellacyanin OS=Rhus vernicifera PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionC01020G09SK Veg1 Citrus clementina cDNA clone C01020G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288472 ID=CX288472; Name=CX288472; organism=Citrus clementina; type=EST; length=708bp
AGGGTTCATTATCCATTCGATAACTCCGCCGGGGGCCGACCTGAAGAACA
CAATCGGAAGAATGGCTTGCCGCGGCTTGATGCCTTCAGTTTGCTGCTTT
ATGTTCGGACTGGCTTTTCTAGCGGCTAGTGCGGCCGCAGCGGAATACAA
ATTGCACTGGATTGTTCCTACCTCAGCTGATTACTATACTAACTGGATTA
GCAACAAAACATTCGAAGTCGGAGATTCAGTGATGTTCAACTGGTCCACA
ACACATAACGTTGCCGATGTATCCAAGTCTGAGTATGATGATTGCTCAAA
AACGAGCTCGGTTGTAGCAAGCCACCCTGTGCAGATCCAATTAAACTCAA
CTGGGAGCCGTTACTTCATCTGTACTGTTGACGATCACTGTGGCCGCGGC
CAAAAGTTGGCCATCACCGTTAAGAATAGCGGGAACGATACGAGCTCTGC
TTCGTTTGTTAGTGTCGGCGCCTTATACCCCGGTTTGGCCATCTCCCTCG
TATATTTCCTGAGTTACTATTATTATATCTGAGCAGGAATTGTCTATCTT
AATTAGTGCTCATATATGTGTATTAAGCCTTGCTATATTTGGCTACAAGC
TAGCTAGGCGATATTGTAAGAGTCTGATTTCAATTCATTATTCCAAGTAT
GTTTGTGTACTGGTACAATTGATTAAGTTTAAATAAATCACTTGTCGTAT
TTACTACA
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