CX288473

Overview
NameCX288473
Unique NameCX288473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
Veg1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: PHT41_ORYSJ (Probable anion transporter 1, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;1 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.493e-37
Identity = 82/118 (69.49%), Postives = 92/118 (77.97%), Query Frame = -1
Query:  297 RKLM--IGSKAPASTILILFLVPNSARGLVP---NSARGAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 635
            RK+M  IG   PA  +  L  + + A  ++    +    AFSQSGLYSNHQDI PRY+GVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSV LYLVGT VWNLFSTGEK++D
Sbjct:  412 RKIMQSIGFLGPAFFLTQLSHIDSPAMAVLCMACSQGTDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVVLYLVGTLVWNLFSTGEKIID 529          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: ANTR1_ARATH (Sodium-dependent phosphate transport protein 1, chloroplastic OS=Arabidopsis thaliana GN=ANTR1 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 71/79 (89.87%), Postives = 76/79 (96.20%), Query Frame = -1
Query:  297 AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 533
            AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGV GTAATG+ILQHGSWDDVF +SVGLYLVGT +WNLFSTGEK++D
Sbjct:  434 AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVLGTAATGHILQHGSWDDVFTISVGLYLVGTVIWNLFSTGEKIID 512          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: ANTR2_ARATH (Probable anion transporter 2, chloroplastic OS=Arabidopsis thaliana GN=ANTR2 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.014e-35
Identity = 79/118 (66.95%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  297 RKLM--IGSKAPASTILILFLVPNSARGLVP---NSARGAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 635
            RK+M  IG   PA  +  L  V   A  ++    +    AFSQSGLYSNHQDI PRY+GVLLGLSNTAGVLAGVFGTAATGYILQ GSWDDVFKV+V LYL+GT VWNLF+TGEK++D
Sbjct:  424 RKIMQSIGFLGPAFFLSQLSHVKTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQRGSWDDVFKVAVALYLIGTLVWNLFATGEKILD 541          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: PHT44_ORYSJ (Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 77/118 (65.25%), Postives = 90/118 (76.27%), Query Frame = -1
Query:  297 RKLM--IGSKAPASTILILFLVPNSARGLVP---NSARGAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHGSWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 635
            RK+M  IG   PA  + +L  V   A  ++    +    AFSQSGLYSNHQDI PRY+GVLLGLSNTAGVLAGVFGTAATGYILQ GSWD VF+V+V LY+VGT VWN+FSTGEKV++
Sbjct:  474 RKIMQSIGFLGPALFLTLLSKVRTPAMAVLCMACSQGSDAFSQSGLYSNHQDIGPRYAGVLLGLSNTAGVLAGVFGTAATGYILQKGSWDSVFQVAVVLYIVGTVVWNVFSTGEKVLE 591          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: PHT45_ORYSJ (Probable anion transporter 5, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;5 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = -1
Query:  309 LVPNSARGAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ-HGSWD-DVFKVSVGLYLVGTAVWNLFSTGE 557
            L    A  +F+ SGLY  HQDI+  Y+ +LLG++NT G + G+ G A TGY+L    SW   +F  S+  YL GTAVW  F++ E
Sbjct:  375 LTSGLALSSFALSGLYCTHQDISREYASILLGITNTVGAVPGIVGVALTGYLLDTTHSWSISLFAPSIFFYLTGTAVWLAFASSE 459          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: ANTR6_ARATH (Probable anion transporter 6, chloroplastic OS=Arabidopsis thaliana GN=ANTR6 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 36/85 (42.35%), Postives = 51/85 (60.00%), Query Frame = -1
Query:  309 LVPNSARGAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQ--HGSWDDVFKVSVGLYLVGTAVWNLFSTGE 557
            L    A  +F+ SGLY  HQDI+P Y+ +LLG++NT G + G+ G A TG++L   H     +F  S+  YL GT VW  F++ E
Sbjct:  424 LTAGLALSSFALSGLYCTHQDISPEYASILLGITNTVGAVPGIVGVALTGFLLDSTHSWTMSLFVPSIFFYLTGTVVWLAFASSE 508          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: ANTR3_ARATH (Probable anion transporter 3, chloroplastic OS=Arabidopsis thaliana GN=ANTR3 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.532e-13
Identity = 47/117 (40.17%), Postives = 65/117 (55.56%), Query Frame = -1
Query:  303 RKLM--IGSKAPASTILILFLVPNSARGLVPNS---ARGAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 635
            RK+M  IG   P  ++L L    + +   V  +   +  +FSQ+G   N QDIAP+Y+G L G+SN AG LA +  T  TGY +Q  GS+     V+  LY   T  W LF+TGE+V
Sbjct:  395 RKIMQSIGFMGPGLSLLCLNFAKSPSCAAVFMTIALSLSSFSQAGFLLNMQDIAPQYAGFLHGISNCAGTLAAIVSTIGTGYFVQWLGSFQAFLTVTAFLYFATTVFWLLFATGERV 511          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: ANTR5_ARATH (Probable anion transporter 5 OS=Arabidopsis thaliana GN=ANTR5 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 37/90 (41.11%), Postives = 53/90 (58.89%), Query Frame = -1
Query:  297 AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 533
            A  ++G   NH DIAPRY+G+++G+SNTAG LAG+ G   TG +L+             SW  VF +   L +  + V+ LFSTGE++ D
Sbjct:  343 ALGRAGFAVNHMDIAPRYAGIVMGVSNTAGTLAGIIGVDLTGKLLEASKLVYSDLSHPESWRVVFFIPGLLCIFSSVVFLLFSTGERIFD 432          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: PHT46_ORYSJ (Probable anion transporter 6 OS=Oryza sativa subsp. japonica GN=PHT4;6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 34/90 (37.78%), Postives = 53/90 (58.89%), Query Frame = -1
Query:  297 AFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQHG-----------SWDDVFKVSVGLYLVGTAVWNLFSTGEKVVD 533
            A  ++G   NH D+AP+++G+++G+SNTAG LAG+ G   TG IL+             SW  VF V   L +  + ++ +FSTGEK+ +
Sbjct:  339 ALGRAGFAVNHMDVAPKFAGIVMGISNTAGTLAGIVGVGLTGRILEAAKASNMDLTSSESWRTVFFVPGYLCIFSSFIFLIFSTGEKIFE 428          
BLAST of CX288473 vs. ExPASy Swiss-Prot
Match: PHT43_ORYSJ (Probable anion transporter 3, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;3 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 46/121 (38.02%), Postives = 65/121 (53.72%), Query Frame = -1
Query:  303 RKLM--IGSKAPASTILILFLVPNSARGLVPNSA-------RGAFSQSGLYSNHQDIAPRYSGVLLGLSNTAGVLAGVFGTAATGYILQH-GSWDDVFKVSVGLYLVGTAVWNLFSTGEKV 635
            RK+M  IG   P   +L L    N+A+  V  SA         +F  SG   N Q+IAP+Y+GVL G+SNTAG  A + GT   G+ +   GS+     ++  LY   T  W++F+TGE+V
Sbjct:  397 RKIMQTIGFVGPGVALLGL----NAAKSPVIASAWLTIAVGLKSFGHSGFLVNLQEIAPQYAGVLHGMSNTAGTFAAILGTVGAGFFVDRMGSFRGFLILTSLLYFSSTLFWDIFATGERV 513          
The following BLAST results are available for this feature:
BLAST of CX288473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
PHT41_ORYSJ5.493e-3769.49Probable anion transporter 1, chloroplastic OS=Ory... [more]
ANTR1_ARATH2.087e-3689.87Sodium-dependent phosphate transport protein 1, ch... [more]
ANTR2_ARATH3.014e-3566.95Probable anion transporter 2, chloroplastic OS=Ara... [more]
PHT44_ORYSJ5.685e-3465.25Probable anion transporter 4, chloroplastic OS=Ory... [more]
PHT45_ORYSJ5.532e-1344.71Probable anion transporter 5, chloroplastic OS=Ory... [more]
ANTR6_ARATH5.532e-1342.35Probable anion transporter 6, chloroplastic OS=Ara... [more]
ANTR3_ARATH5.532e-1340.17Probable anion transporter 3, chloroplastic OS=Ara... [more]
ANTR5_ARATH1.043e-1141.11Probable anion transporter 5 OS=Arabidopsis thalia... [more]
PHT46_ORYSJ5.178e-1137.78Probable anion transporter 6 OS=Oryza sativa subsp... [more]
PHT43_ORYSJ6.762e-1138.02Probable anion transporter 3, chloroplastic OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionC01020G10SK Veg1 Citrus clementina cDNA clone C01020G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288473 ID=CX288473; Name=CX288473; organism=Citrus clementina; type=EST; length=722bp
GAGGCTTTTGTGTCATTACAATTTTTCTTACAAATATATTCTTCTTTATT
GAGAATTTGAGATGGATTCATTGATGCAACTTTTCTGAGAATTGAACTGG
ATTCTTCCACAAATTTCAATATGCCGGCAGTTTCCTGGGCCTTTGGAAAA
TTCGGTCGATCTTCAAGATCAAGAATCCAAAATGAAATCTCTTGCAATTT
CAATGTTTTGATCTTCTGTCAAATCAATCAGTTGAAGTCTCTTCTATTCT
AGCTCAGGCTTGAGCCGATGCTTGTTATTGGGTCCCCTAGGAGTTAATCC
ACAACTTTCTCACCAGTTGAAAAGAGATTCCACACCGCAGTTCCAACCAG
ATAGAGCCCAACAGAAACCTTGAAAACATCGTCCCAAGAACCATGTTGCA
AGATATAGCCAGTAGCTGCAGTTCCAAACACTCCTGCCAGAACTCCTGCA
GTATTGGACAGACCAAGCAATACTCCAGAATAACGGGGGGCAATATCCTG
ATGGTTTGAATATAGACCAGACTGTGAGAATGCACCTCGTGCCGAATTCG
GCACGAGGCCTCGTGCCGAATTCGGCACGAGGAATAAGATCAAAATCGTT
GAAGCTGGAGCCTTGGAACCAATCATTAGCTTCCTGCAGTCACCAGATTT
GAATCTACAGGAGTATGCCGCTGCAGCTTTGCTCACACTATCTGCTTCTT
CTGTCAACAGCCTTTTATAGTG
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