CX288507

Overview
NameCX288507
Unique NameCX288507
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length508
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14533 contig Ccv1_Contig14533:154..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_BOVIN (Coiled-coil domain-containing protein 130 OS=Bos taurus GN=CCDC130 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.853e-46
Identity = 93/163 (57.06%), Postives = 115/163 (70.55%), Query Frame = 3
Query:   21 GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLS-DPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL 506
            GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ED E +     E++ KL  D  +RLEH EAD    K+A P L  IQ  +   + DD+AL
Sbjct:   21 GSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMEDNEQVLTTEHEKKQKLEMDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFAL 182          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_RAT (Coiled-coil domain-containing protein 130 OS=Rattus norvegicus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.391e-46
Identity = 92/163 (56.44%), Postives = 115/163 (70.55%), Query Frame = 3
Query:   21 GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL 506
            GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+AL
Sbjct:   21 GSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFAL 182          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_MOUSE (Coiled-coil domain-containing protein 130 OS=Mus musculus GN=Ccdc130 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.041e-46
Identity = 91/163 (55.83%), Postives = 115/163 (70.55%), Query Frame = 3
Query:   21 GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL 506
            GSLN++H  H LRERARKL QGIL+IRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGA RK E +D+ED E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+AL
Sbjct:   21 GSLNRYHNSHPLRERARKLSQGILVIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGASRKEERWDMEDNEQVLTTEHEKKEKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQNAWKDDFAL 182          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_HUMAN (Coiled-coil domain-containing protein 130 OS=Homo sapiens GN=CCDC130 PE=1 SV=2)

HSP 1 Score: 182.956 bits (463), Expect = 7.041e-46
Identity = 92/163 (56.44%), Postives = 115/163 (70.55%), Query Frame = 3
Query:   21 GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL 506
            GSLN++H  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP NC+YVI+SGAQRK E +D+ D E +     E++ KL +D  +RLEH EAD    K+A P L  IQ  +   + DD+AL
Sbjct:   21 GSLNRYHNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPANCDYVIVSGAQRKEERWDMADNEQVLTTEHEKKQKLETDAMFRLEHGEADRSTLKKALPTLSHIQE-AQSAWKDDFAL 182          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_XENLA (Coiled-coil domain-containing protein 130 OS=Xenopus laevis GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.272e-43
Identity = 85/163 (52.15%), Postives = 113/163 (69.33%), Query Frame = 3
Query:   21 GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL 506
            GSLN +   H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP +C+YVI+SGAQRK E +D++D E +     E++ +L +D  +RLEH   D  K + A P L ++Q +    + DD+A+
Sbjct:   21 GSLNGYRNSHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPASCDYVIVSGAQRKEERWDMQDNEQILTTEHEQKQRLETDSMFRLEHGVQDKAKLQRAAPSLSELQEVQSA-WKDDFAI 182          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_DANRE (Coiled-coil domain-containing protein 130 homolog OS=Danio rerio GN=ccdc130 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 3.061e-41
Identity = 84/163 (51.53%), Postives = 111/163 (68.10%), Query Frame = 3
Query:   21 GSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL 506
            GS+N ++  H LRERARKL QGILIIRFEMP+NIWC GC + I  GVR+NAEKK+VGNYY+T I+ F MK   C + I +QTDP  C+YVI+SGAQRK E +D+ + E +      E+ KL +D  Y+L+H   D +K + A P L ++Q    G + DD+ L
Sbjct:   21 GSINGYYKTHPLRERARKLSQGILIIRFEMPYNIWCDGCKNHIGMGVRYNAEKKKVGNYYTTPIYRFRMKCHLCVNYIEMQTDPATCDYVIVSGAQRKEERWDMAENEQILTTERNEKEKLETDAMYKLDHGGKDKEKLRAAIPSLNELQEHQSG-WKDDFQL 182          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_DICDI (Coiled-coil domain-containing protein 130 homolog OS=Dictyostelium discoideum GN=DDB_G0281599 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.286e-39
Identity = 80/182 (43.96%), Postives = 117/182 (64.29%), Query Frame = 3
Query:    3 EWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPA--------------DEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDYAL 506
            +W P++GS+N++ GQH LR+RARK+DQGILIIRFEMPF++WC GC   I  GVRFNAEKK V  Y+++ I+SF MK   C +Q  IQ DPKN +Y +ISG +++ E+F+ ED+   ELP+              +      +D   +LE+++ D++K K+   +L ++Q I   R  +DY L
Sbjct:   14 DWDPSKGSINQYRGQHHLRDRARKIDQGILIIRFEMPFSVWCLGCECHIGMGVRFNAEKKTVDKYFTSNIYSFKMKCHQCSNQFEIQNDPKNTDYKLISGLKKRIEQFNPEDS---ELPSSFIIKYDDNNNNNNNNNNNDNNDTLLKLENKKLDIEKGKKESTQLEKLQEIMTNRTINDYQL 192          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_DROME (Coiled-coil domain-containing protein 130 homolog OS=Drosophila melanogaster GN=CG15084 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.053e-37
Identity = 74/167 (44.31%), Postives = 107/167 (64.07%), Query Frame = 3
Query:    3 EWTPNQGSLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFD-VEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDY 500
            ++ P +G LNKF G HALRERARK+  GI+IIRFEMP+NIWC GC + I  GVR+NAEK +VG YY+T ++ F MK   C +   IQTDP N +YVI+SGA+R+   +D +++ + +    + ++    D  Y+LEHQ  D +   +A P L ++   +   + D Y
Sbjct:   14 DYDPKKGGLNKFQGTHALRERARKIHLGIIIIRFEMPYNIWCDGCKNHIGMGVRYNAEKTKVGMYYTTPVFKFRMKCHLCDNHFEIQTDPGNLDYVILSGARRQENRWDPLQNEQVVPETKEVQKRLFDDAMYKLEHQAKDAKAGADARPVLQKLVERNMSVWDDSY 180          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CC130_CAEEL (Coiled-coil domain-containing protein 130 homolog OS=Caenorhabditis elegans GN=ZK1307.9 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 9.539e-35
Identity = 73/160 (45.62%), Postives = 102/160 (63.75%), Query Frame = 3
Query:   24 SLNKFHGQHALRERARKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKL-SDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDY 500
            SLN +HG HALRERA+K+DQGIL+IRFEMPFNIWC GC++ +  GVR+NAEKK++G YY+T +  F MK   C +  VI+TDPKN +Y ++ G  R+   FD  D   +         KL +D  ++ EH+  D  K    E R+ +++ I + R  DD+
Sbjct:   22 SLNGYHGTHALRERAKKIDQGILVIRFEMPFNIWCLGCHNHVGMGVRYNAEKKKIGMYYTTPLHEFRMKCHLCDNYYVIRTDPKNFDYELVEGCSRQELRFDPTDIAQIGAVDRGFTQKLAADAMFKKEHEAEDKDKAATEEGRVDKLEWIQE-RMRDDF 180          
BLAST of CX288507 vs. ExPASy Swiss-Prot
Match: CWC16_SCHPO (Protein cwc16 OS=Schizosaccharomyces pombe GN=cwc16 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 8.949e-25
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 3
Query:   69 RKLDQGILIIRFEMPFNIWCGGCNSMIAKGVRFNAEKKQVGNYYSTKIWSFTMKSPCCKHQIVIQTDPKNCEYVIISGAQRKTEEFDVEDAETLELPADEERGKLSDPFYRLEHQEADLQKKKEAEPRLVQIQRISDGRFSDDY 500
            RK D+   +IRFEMPF +WC  C ++I +G RFNA KK++G+YY+TKIWSF++K   C + I + TDPKN EY++ SG +RK E  D+ +       A+ +    SD    LE Q    + +K     +  I   ++  +SD +
Sbjct:   14 RKFDKLRNVIRFEMPFPVWCNNCENIIQQGTRFNAVKKEIGSYYTTKIWSFSLKCHLCSNPIDVHTDPKNTEYIVASGGRRKIEPQDINERPA---KAENDEKVPSDAIEALETQLTQQKSEKHNSSVINFIYEKNERLWSDPF 154          
The following BLAST results are available for this feature:
BLAST of CX288507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
CC130_BOVIN1.853e-4657.06Coiled-coil domain-containing protein 130 OS=Bos t... [more]
CC130_RAT5.391e-4656.44Coiled-coil domain-containing protein 130 OS=Rattu... [more]
CC130_MOUSE7.041e-4655.83Coiled-coil domain-containing protein 130 OS=Mus m... [more]
CC130_HUMAN7.041e-4656.44Coiled-coil domain-containing protein 130 OS=Homo ... [more]
CC130_XENLA4.272e-4352.15Coiled-coil domain-containing protein 130 OS=Xenop... [more]
CC130_DANRE3.061e-4151.53Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DICDI1.286e-3943.96Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_DROME2.053e-3744.31Coiled-coil domain-containing protein 130 homolog ... [more]
CC130_CAEEL9.539e-3545.63Coiled-coil domain-containing protein 130 homolog ... [more]
CWC16_SCHPO8.949e-2538.89Protein cwc16 OS=Schizosaccharomyces pombe GN=cwc1... [more]

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Properties
Property NameValue
Genbank descriptionC02001B11SK IF1 Citrus clementina cDNA clone C02001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288507 ID=CX288507; Name=CX288507; organism=Citrus clementina; type=EST; length=508bp
CAGAATGGACCCCAAATCAGGGTTCTTTGAACAAGTTTCATGGTCAACAT
GCTTTGAGGGAAAGAGCAAGAAAGTTAGATCAGGGAATTTTGATTATAAG
GTTTGAGATGCCTTTCAATATATGGTGCGGTGGATGCAATTCTATGATTG
CAAAGGGTGTTCGTTTCAATGCTGAAAAGAAGCAAGTGGGAAATTATTAC
TCTACAAAGATATGGAGTTTTACGATGAAGTCTCCGTGCTGCAAACATCA
GATTGTTATCCAGACAGATCCAAAGAATTGTGAGTATGTAATTATTAGTG
GAGCTCAGCGAAAGACAGAGGAGTTTGACGTTGAGGATGCAGAGACTCTT
GAACTCCCTGCAGATGAGGAAAGGGGTAAGCTTTCAGATCCATTTTATCG
TCTTGAGCACCAGGAAGCTGACCTGCAGAAGAAGAAAGAAGCTGAGCCAA
GACTGGTGCAAATTCAGAGAATATCTGATGGCAGGTTTTCAGACGACTAT
GCACTAAA
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