CX288515

Overview
NameCX288515
Unique NameCX288515
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length567
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_NEMVE (Cell division cycle protein 123 homolog OS=Nematostella vectensis GN=cdc123 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.125e-34
Identity = 74/148 (50.00%), Postives = 99/148 (66.89%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            KIKE+I+ LGG VFPKLNWSAP+DA+WIS   TLRC S  +I LLL+SSD++   LC A+  C D +     SF L LRKW  ++ P MEFRCFVR   LV ISQR+++  Y  L+E +++I   I   ++S + ++F   +Y FDVY
Sbjct:   88 KIKEAIQELGGEVFPKLNWSAPRDASWISHDNTLRCKSPGDIYLLLKSSDTIDRVLCDAFIHCEDNSTQTHDSFELILRKW-QNIYPAMEFRCFVRNNELVAISQRDISNYYHFLAENEDEICADILNFYESKIAEKFPDTSYVFDVY 234          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_XENLA (Cell division cycle protein 123 homolog OS=Xenopus laevis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.597e-32
Identity = 66/149 (44.30%), Postives = 97/149 (65.10%), Query Frame = 1
Query:  118 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            +K++E+I SLGG+VFPKLNWS+P+DA WI+ + +L+CT+  +I LL +SSD + HD    +  C D +      + L LRKW   L P  EFRCFVR   L+GISQR+ T  Y  +S++K +I+  IQ  F  +++  F  E++ FD+Y
Sbjct:   89 IKVQEAINSLGGSVFPKLNWSSPRDAYWIALNSSLKCTTLSDIFLLFKSSDFVTHDFTQPFIYCADDSPDPNIKYELVLRKWC-ELIPGAEFRCFVRENKLIGISQRDYTQYYDHISKQKEEIRKSIQYFFQEHIQYNFPDEDFVFDIY 236          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_RAT (Cell division cycle protein 123 homolog OS=Rattus norvegicus GN=Cdc123 PE=1 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.870e-32
Identity = 66/148 (44.59%), Postives = 97/148 (65.54%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C S  +I LL +SSD + HD    +  CND +      + L LRKW   L P  EFRCFV+   L+GISQR+ T  Y  +S++K +I   IQ+ F  +++ +F  E++ FD+Y
Sbjct:   89 QVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKSLSDIFLLFKSSDFITHDFTQPFIHCNDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKEHLQYKFLDEDFVFDIY 235          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_XENTR (Cell division cycle protein 123 homolog OS=Xenopus tropicalis GN=cdc123 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 2.199e-31
Identity = 65/149 (43.62%), Postives = 96/149 (64.43%), Query Frame = 1
Query:  118 LKIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            +K++E+I SLGG+VFPKLNWS+P+DA WI+ + +L+C +  +I LL +SSD + HD    +  C D +      + L LRKW   L P  EFRCFV+   L+GISQR+ T  Y  +S++K +I+  IQ  F  +++  F  E++ FDVY
Sbjct:   89 IKVQEAINSLGGSVFPKLNWSSPRDAYWIALNSSLKCQTLSDIFLLFKSSDFVTHDFTQPFIYCADDSPDPNIKYELVLRKWC-ELIPGAEFRCFVKENNLIGISQRDYTQYYDHISKQKEEIRKSIQYFFQEHIQYNFPDEDFVFDVY 236          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_HUMAN (Cell division cycle protein 123 homolog OS=Homo sapiens GN=CDC123 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 4.898e-31
Identity = 64/148 (43.24%), Postives = 96/148 (64.86%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            K++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD +  D    +  C D +      + L LRKW   L P  EFRCFV+   L+GISQR+ T  Y  +S++K +I+  IQ+ F  +++ +F  E++ FD+Y
Sbjct:   89 KVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEIRRCIQDFFKKHIQYKFLDEDFVFDIY 235          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_MOUSE (Cell division cycle protein 123 homolog OS=Mus musculus GN=Cdc123 PE=2 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.091e-30
Identity = 64/148 (43.24%), Postives = 96/148 (64.86%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD + HD    +  C D +      + L LRKW   L P  EFRCFV+   L+GISQR+ T  Y  +S++K +I   IQ+ F  +++ +F  E++ FD+Y
Sbjct:   89 QVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITHDFTQPFIHCTDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKEHLQYKFLDEDFVFDIY 235          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_BOVIN (Cell division cycle protein 123 homolog OS=Bos taurus GN=CDC123 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.425e-30
Identity = 64/148 (43.24%), Postives = 95/148 (64.19%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            K++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD +  D    +  C D +      + L LRKW   L P  EFRCFV+   L+GISQR+ T  Y  +S++K +I   IQ+ F  +++ +F  E++ FD+Y
Sbjct:   89 KVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCMEYELVLRKWC-ELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKKHIQYKFLDEDFVFDIY 235          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_DICDI (Cell division cycle protein 123 homolog OS=Dictyostelium discoideum GN=cdc123 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.175e-30
Identity = 66/149 (44.30%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYV 567
            +I +SIE LGG +FPKLNWS+PKDA+W++   +L+CT+  +I LLL+SSD + HDL     + +DK  +  P + L LRKW  +L+P MEFRCFV+   L+GISQR+++  +  L +KK  I+  I + ++ ++  +F + ++TFD YV
Sbjct:  128 QIIKSIEKLGGNIFPKLNWSSPKDASWMNVYNSLKCTNTTDIYLLLKSSDFINHDLMQFSINQDDKDDSLTP-YVLVLRKW-QNLQPSMEFRCFVKDNQLLGISQRDISTYFKFLKDKKQKIQDAIVKFYNESICGKFSNNSFTFDCYV 274          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_MACFA (Cell division cycle protein 123 homolog OS=Macaca fascicularis GN=CDC123 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 5.416e-30
Identity = 63/148 (42.57%), Postives = 95/148 (64.19%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWISTSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSCNDKTLTRPPSFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVY 564
            +++E+I SLGG+VFPKLNWSAP+DA WI+ + +L+C +  +I LL +SSD +  D    +  C D +      + L LRKW   L P  EFRCFV+   L+GISQR+ T  Y  +S++K +I   IQ+ F  +++ +F  E++ FD+Y
Sbjct:   89 QVQEAINSLGGSVFPKLNWSAPRDAYWIAMNSSLKCKTLSDIFLLFKSSDFITRDFTQPFIHCTDDSPDPCIEYELVLRKWC-ELIPGAEFRCFVKENKLIGISQRDYTQYYDHISKQKEEICRCIQDFFKKHIQYKFLDEDFVFDIY 235          
BLAST of CX288515 vs. ExPASy Swiss-Prot
Match: CD123_SCLS1 (Cell division cycle protein 123 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=CDC123 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.585e-29
Identity = 67/152 (44.08%), Postives = 97/152 (63.82%), Query Frame = 1
Query:  121 KIKESIESLGGAVFPKLNWSAPKDAAWIS-TSGTLRCTSFCEIALLLRSSDSLVHDLCHAYDSC-NDKTLTRPP-SFFLALRKWYPSLRPEMEFRCFVRGQCLVGISQREVTMCYPALSEKKNDIKVLIQELFDSNVRQEFESENYTFDVYV 567
            +I+E+I  LGG+V PKLNWSAPKDA WIS    ++ C +  ++ LLL+SSD + HDL HA+D C  D +LT+    + L LRKW+  + P  EFRCFVR + ++GI QR++   +  L      ++  IQE FD  ++  F   N++FDVY+
Sbjct:  111 QIQETITELGGSVVPKLNWSAPKDATWISLKQNSMECNTANDVYLLLKSSDFITHDLEHAFDGCAEDPSLTKENIQYVLVLRKWF-KVNPSCEFRCFVRDRRIIGICQRDLNY-FDFLFPLIPTLREAIQEYFDRTLKDSFPDRNFSFDVYI 260          
The following BLAST results are available for this feature:
BLAST of CX288515 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CD123_NEMVE2.125e-3450.00Cell division cycle protein 123 homolog OS=Nematos... [more]
CD123_XENLA2.597e-3244.30Cell division cycle protein 123 homolog OS=Xenopus... [more]
CD123_RAT9.870e-3244.59Cell division cycle protein 123 homolog OS=Rattus ... [more]
CD123_XENTR2.199e-3143.62Cell division cycle protein 123 homolog OS=Xenopus... [more]
CD123_HUMAN4.898e-3143.24Cell division cycle protein 123 homolog OS=Homo sa... [more]
CD123_MOUSE1.091e-3043.24Cell division cycle protein 123 homolog OS=Mus mus... [more]
CD123_BOVIN1.425e-3043.24Cell division cycle protein 123 homolog OS=Bos tau... [more]
CD123_DICDI3.175e-3044.30Cell division cycle protein 123 homolog OS=Dictyos... [more]
CD123_MACFA5.416e-3042.57Cell division cycle protein 123 homolog OS=Macaca ... [more]
CD123_SCLS14.585e-2944.08Cell division cycle protein 123 OS=Sclerotinia scl... [more]

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Properties
Property NameValue
Genbank descriptionC02001C08SK IF1 Citrus clementina cDNA clone C02001C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288515 ID=CX288515; Name=CX288515; organism=Citrus clementina; type=EST; length=567bp
GATGACGCGCTGCCGAATAGAATCCACAATGCTTTTGAAGAAGAGGACTA
TCAGGTCTCTGAAGGATCTGGAGATGAAGCAGAACCTTCATCTCCTCCAT
CTTTTCCAGAACTAGAATTAAAGATCAAGGAATCTATTGAATCCCTTGGG
GGTGCAGTTTTCCCTAAGCTGAATTGGAGTGCACCAAAAGATGCCGCTTG
GATCAGCACTTCTGGGACCCTTCGATGCACTTCATTCTGTGAGATTGCAC
TCTTACTACGGTCATCTGATTCCTTGGTTCATGATTTGTGTCATGCATAT
GATTCATGCAATGATAAGACCTTGACAAGACCACCAAGTTTCTTCCTCGC
CCTCCGCAAGTGGTATCCATCCTTACGACCAGAGATGGAGTTCCGATGTT
TCGTACGTGGTCAGTGCCTAGTTGGAATTTCCCAGCGAGAGGTCACGATG
TGTTATCCTGCTCTATCTGAGAAGAAAAATGATATTAAAGTGTTGATCCA
AGAACTTTTTGACAGCAATGTGAGACAAGAATTTGAGTCAGAAAATTACA
CATTTGATGTTTATGTC
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