CX288519

Overview
NameCX288519
Unique NameCX288519
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length635
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SRCAP_HUMAN (Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 1.921e-34
Identity = 70/114 (61.40%), Postives = 85/114 (74.56%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GHRVLIF+Q T MLD+LE  L   G  Y RLDGST+V +RQA+++ FN D  IF  +LSTR+GG G+NLTGADTVV +D D+NP +D QA+DRCHRIGQTR V IYR     T+
Sbjct: 2059 GHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTV 2172          

HSP 2 Score: 26.1794 bits (56), Expect = 1.921e-34
Identity = 11/30 (36.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  475 RLVTKGTVDENVYEIAKRKLILDAAVLESG 564
            RL+++ TV+EN+ + A +K +L    +E G
Sbjct: 2165 RLISERTVEENILKKANQKRMLGDMAIEGG 2194          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_EMENI (Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 7.683e-34
Identity = 67/115 (58.26%), Postives = 87/115 (75.65%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GGHR LIF+Q T MLD+LE  L++ G  Y RLDG+T+V +RQ + D FNND  I A +LS+R+GG G+NLTGADTV+ +D+D+NP +D+Q +DRCHRIGQTR V IYR     T+
Sbjct: 1346 GGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEYTI 1460          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_ASPFU (Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.712e-33
Identity = 67/115 (58.26%), Postives = 86/115 (74.78%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GGHR LIF+Q T MLDILE  L++ G  Y RLDG+T+V +RQ + D FNND  I   +LS+R+GG G+NLTGADTV+ +D+D+NP +D+Q +DRCHRIGQTR V IYR     T+
Sbjct: 1393 GGHRALIFTQMTKMLDILEQFLNIHGHRYLRLDGTTKVEQRQILTDRFNNDDRILVFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHIYRFVSEHTI 1507          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_GIBZE (Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.920e-33
Identity = 67/115 (58.26%), Postives = 85/115 (73.91%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GGHR LIF+Q T +LDILE  L++ G  Y RLDG+T+V +RQ + D FNND  I   +LSTR+GG G+NLTGADTV+ +D D+NP +D+Q +DRCHRIGQTR V IYR     T+
Sbjct: 1386 GGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNNDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTI 1500          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: DOM_DROME (Helicase domino OS=Drosophila melanogaster GN=dom PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 8.494e-33
Identity = 68/114 (59.65%), Postives = 85/114 (74.56%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GHRVLIF+Q T MLD+LE  L+  G  Y RLDGST+V +RQ +++ FN D  IF  +LSTR+GG G+NLTGADTV+ +D D+NP +D QA+DRCHRIGQTR V IYR     T+
Sbjct: 1674 GHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILMERFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLVSERTI 1787          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_NEUCR (Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.109e-32
Identity = 66/115 (57.39%), Postives = 85/115 (73.91%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GGHR LIF+Q T +LDILE  L++ G  Y RLDG+T+V +RQ + D FN+D  I   +LSTR+GG G+NLTGADTV+ +D D+NP +D+Q +DRCHRIGQTR V IYR     T+
Sbjct: 1521 GGHRALIFTQMTKVLDILEQFLNIHGHKYLRLDGATKVEQRQILTDRFNHDPRILCFILSTRSGGLGINLTGADTVIFYDQDWNPAMDKQCQDRCHRIGQTRDVHIYRLVSEHTI 1635          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_YARLI (Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.216e-32
Identity = 63/115 (54.78%), Postives = 85/115 (73.91%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GGHR LIF+Q T +LD+LE  L++ G+ Y RLDG+T++ +RQ + + FN D  I   +LSTR+GG G+NLTGADTV+ +D D+NP +D+Q +DRCHRIGQTR V IYR     T+
Sbjct: 1484 GGHRALIFTQMTKVLDVLEQFLNIHGLRYMRLDGATKIEQRQLLTERFNTDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPSMDKQCQDRCHRIGQTRDVHIYRFVSEHTI 1598          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_USTMA (Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.958e-32
Identity = 65/115 (56.52%), Postives = 82/115 (71.30%), Query Frame = 2
Query:   41 GGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GGHR+LIF+Q T +LDILE  L+  G  Y RLDG+T+V  RQA+ + FN D  I A +LSTR+GG G+NLTGADTV+ +D+D+N  I+ Q  DR HRIGQTR V IYR     T+
Sbjct: 1548 GGHRILIFTQMTRVLDILESFLNYHGYRYLRLDGATKVESRQALTEQFNRDARISAFILSTRSGGLGINLTGADTVLFYDLDWNAAIEAQCMDRAHRIGQTRDVHIYRFVTEHTI 1662          

HSP 2 Score: 28.8758 bits (63), Expect = 4.958e-32
Identity = 12/30 (40.00%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  475 RLVTKGTVDENVYEIAKRKLILDAAVLESG 564
            R VT+ T++EN+   A +K +LD  V++ G
Sbjct: 1655 RFVTEHTIEENMLRKANQKRLLDNVVIQQG 1684          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.227e-31
Identity = 66/114 (57.89%), Postives = 85/114 (74.56%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYRSFKHPTL 385
            GHRVLIF+Q T +LDILE  L++ G  Y RLDG+T++ +RQ + + FNND  I   +LSTR+GG G+NLTGADTV+ +D D+NPQ+D QA+DR HRIGQTR V IYR     T+
Sbjct: 1007 GHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTV 1120          
BLAST of CX288519 vs. ExPASy Swiss-Prot
Match: SWR1_CRYNE (Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.432e-31
Identity = 63/107 (58.88%), Postives = 79/107 (73.83%), Query Frame = 2
Query:   44 GHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTERQAIVDAFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTRPVTIYR 364
            GHRVLIF+Q T +LDILE  L   G  Y RLDGST++ +RQ + + FN+D+ IF  + S+R+GG G+NLTGADTV  +D D+NP +DRQ  DR HRIGQTR V IYR
Sbjct:  954 GHRVLIFTQMTRVLDILEMFLSHNGHRYLRLDGSTKIEDRQVLTERFNSDSRIFVFIASSRSGGVGINLTGADTVFFYDSDWNPSMDRQCMDRAHRIGQTREVHIYR 1060          

HSP 2 Score: 27.7202 bits (60), Expect = 1.432e-31
Identity = 12/30 (40.00%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  475 RLVTKGTVDENVYEIAKRKLILDAAVLESG 564
            R V+  TV+EN+   A++K +LD  V++ G
Sbjct: 1060 RFVSSHTVEENMLRKAEQKRLLDKMVIQEG 1089          
The following BLAST results are available for this feature:
BLAST of CX288519 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
SRCAP_HUMAN1.921e-3461.40Helicase SRCAP OS=Homo sapiens GN=SRCAP PE=1 SV=2[more]
SWR1_EMENI7.683e-3458.26Helicase swr1 OS=Emericella nidulans GN=swr1 PE=3 ... [more]
SWR1_ASPFU1.712e-3358.26Helicase swr1 OS=Aspergillus fumigatus GN=swr1 PE=... [more]
SWR1_GIBZE2.920e-3358.26Helicase SWR1 OS=Gibberella zeae GN=SWR1 PE=3 SV=1[more]
DOM_DROME8.494e-3359.65Helicase domino OS=Drosophila melanogaster GN=dom ... [more]
SWR1_NEUCR1.109e-3257.39Helicase swr-1 OS=Neurospora crassa GN=swr-1 PE=3 ... [more]
SWR1_YARLI4.216e-3254.78Helicase SWR1 OS=Yarrowia lipolytica GN=SWR1 PE=3 ... [more]
SWR1_USTMA4.958e-3256.52Helicase SWR1 OS=Ustilago maydis GN=SWR1 PE=3 SV=1[more]
SWR1_SCHPO1.227e-3157.89Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
SWR1_CRYNE1.432e-3158.88Helicase SWR1 OS=Cryptococcus neoformans GN=SWR1 P... [more]

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Properties
Property NameValue
Genbank descriptionC02001C12SK IF1 Citrus clementina cDNA clone C02001C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288519 ID=CX288519; Name=CX288519; organism=Citrus clementina; type=EST; length=635bp
ATGTCGGGTATTATCTAAACTTCTCCCTTCACTGAAAAAAGGTGGTCATC
GGGTTTTGATTTTTAGCCAATGGACGTCAATGCTTGATATTCTGGAGTGG
ACTTTGGATGTGATTGGTGTTACATATAGACGTCTTGATGGAAGTACCCA
AGTGACAGAGAGGCAGGCTATAGTCGACGCCTTCAATAATGACACTTCTA
TTTTTGCATGCTTGCTTTCAACAAGAGCTGGAGGCCAGGGTTTAAACTTG
ACTGGCGCCGATACTGTCGTCATCCATGACATGGATTTCAATCCGCAAAT
TGACCGTCAAGCTGAAGATCGTTGTCATCGAATTGGCCAAACAAGGCCGG
TAACCATATACAGGTCATTTAAACATCCCACTCTTATTCTTCTCTTGCAT
GTATTTAGTGAACTTTTTAACTGTTGCAAACTTGTATGGTGTATGCTTTT
GCTCTATCTGCTCAAGTCCTCTGCAGGCTAGTAACAAAGGGTACGGTTGA
CGAGAATGTGTATGAGATAGCAAAGCGAAAGCTCATCTTGGATGCTGCAG
TGCTCGAGTCTGGCGTGGAGGTAGATAATGAAGGTGACACATCTGATATG
ACTATGGGAGAGATATTATCATCCATCCTGATGGG
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