CX288542

Overview
NameCX288542
Unique NameCX288542
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length587
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPD_HUMAN (Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 SV=3)

HSP 1 Score: 246.128 bits (627), Expect = 9.365e-65
Identity = 119/193 (61.66%), Postives = 146/193 (75.65%), Query Frame = 3
Query:    3 TCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIMAG 581
            TCSFP NGKFT+DQ  +Y AVL++  AV+ AMKPGV W DMH+LA++I LE L   G++ G+VD M+ A LGAVFMPHGLGHFLGID HD GGYP+G ER  EPGL+SLRT R LQ  MV+TVEPG YFID LL  A+ + + + F N EV+ RF+ FGGVRIE DV+VT +G + +T VPR + +IEA MAG
Sbjct:  289 TCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMHRLADRIHLEELAHMGILSGSVDAMVQAHLGAVFMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPARASFLNREVLQRFRGFGGVRIEEDVVVTDSGIELLTCVPRTVEEIEACMAG 481          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPD_RAT (Xaa-Pro dipeptidase OS=Rattus norvegicus GN=Pepd PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 1.766e-63
Identity = 116/193 (60.10%), Postives = 146/193 (75.65%), Query Frame = 3
Query:    3 TCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIMAG 581
            TCSFP NGKFT DQ  IY AVL++   V++ MKPGV W DMH+LA++I LE L + G++ G+VD M+   LGAVFMPHGLGHFLG+D HD GGYP+G ER  EPGL+SLRT R L+  MV+TVEPG YFID LL  A+ + + + FFN EV+ RF++FGGVRIE DV+VT +G + +T VPR + +IEA MAG
Sbjct:  289 TCSFPANGKFTDDQKAIYEAVLRSCRTVMSTMKPGVWWPDMHRLADRIHLEELTRIGLLSGSVDAMLQVHLGAVFMPHGLGHFLGLDVHDVGGYPEGVERIDEPGLRSLRTARHLEPGMVLTVEPGIYFIDHLLDQALADPAQACFFNQEVLQRFRNFGGVRIEEDVVVTDSGMELLTCVPRTVEEIEACMAG 481          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPD_MOUSE (Xaa-Pro dipeptidase OS=Mus musculus GN=Pepd PE=2 SV=3)

HSP 1 Score: 241.891 bits (616), Expect = 1.766e-63
Identity = 116/193 (60.10%), Postives = 146/193 (75.65%), Query Frame = 3
Query:    3 TCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIMAG 581
            TCSFP NGKFT DQ  IY AVL++   V++ MKPGV W DMH+LA++I LE L + G++ G+VD M+   LGAVFMPHGLGHFLG+D HD GGYP+G ER  EPGL+SLRT R L+  MV+TVEPG YFID LL  A+ + + + FFN EV+ RF++FGGVRIE DV+VT +G + +T VPR + +IEA MAG
Sbjct:  289 TCSFPANGKFTEDQKAIYEAVLRSCRTVMSTMKPGVWWPDMHRLADRIHLEELARIGLLSGSVDAMLQVHLGAVFMPHGLGHFLGLDVHDVGGYPEGVERIDEPGLRSLRTARHLEPGMVLTVEPGIYFIDHLLDQALADPAQACFFNQEVLQRFRNFGGVRIEEDVVVTDSGMELLTCVPRTVEEIEACMAG 481          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPD_PONAB (Xaa-Pro dipeptidase OS=Pongo abelii GN=PEPD PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 2.307e-63
Identity = 118/193 (61.14%), Postives = 145/193 (75.13%), Query Frame = 3
Query:    3 TCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIMAG 581
            TCSFP NGKFT+DQ  +Y AVL++  AV+ AMKPGV W DM +LA++I LE L   G++ G+VD M+ A LGAV MPHGLGHFLGID HD GGYP+G ER  EPGL+SLRT R LQ  MV+TVEPG YFID LL  A+ + + + FFN EV+ RF+ FGGVRIE DV+VT +G + +T VPR + +IEA MAG
Sbjct:  289 TCSFPANGKFTADQKAVYEAVLRSSRAVMGAMKPGVWWPDMRRLADRIHLEELAHTGILSGSVDAMVQAHLGAVSMPHGLGHFLGIDVHDVGGYPEGVERIDEPGLRSLRTARHLQPGMVLTVEPGIYFIDHLLDEALADPAHACFFNREVLQRFRGFGGVRIEEDVVVTDSGMELLTCVPRTVEEIEACMAG 481          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPD_DICDI (Xaa-Pro dipeptidase OS=Dictyostelium discoideum GN=pepd PE=3 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 2.556e-54
Identity = 103/192 (53.65%), Postives = 139/192 (72.40%), Query Frame = 3
Query:    3 TCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT-SVPREISDIEAIM 575
            TCSFP  GKF+ +Q ++Y AVL A  AV+ AM+PGV WVDMHKLAE+ IL +L K G++VG++ +++A ++G+VF PHGLGHFLG+DTHD GGY        +P + SLRT R L+  MVIT EPGCYFI+ LL  A+ N  T+KFFN   + ++++ GGVRIE D+LVT  G  N++ ++PR I +IEA M
Sbjct:  312 TCSFPATGKFSPEQRVVYQAVLDASVAVMEAMRPGVSWVDMHKLAERCILAALLKAGILVGDLQDLIANKIGSVFFPHGLGHFLGLDTHDVGGYLGDC----QPKVHSLRTTRTLKAGMVITSEPGCYFINHLLTQALSNPETAKFFNLTELDKYRNIGGVRIEDDILVTETGCDNLSKNLPRTIDEIEAFM 499          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: YFH6_YEAST (Uncharacterized peptidase YFR006W OS=Saccharomyces cerevisiae GN=YFR006W PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.691e-32
Identity = 74/194 (38.14%), Postives = 108/194 (55.67%), Query Frame = 3
Query:    3 TCSFPVNGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVG--NVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGYPKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAME-NESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMTSVPREISDIEAIM 575
            T  FP +GKFT++   +Y  VL   N  +  +KPG  W D+H L  K++++     G+     + DE+   R    F PHGLGH LG+D HD GG P   +   +P  + LR  R L+E MVIT EPGCYF   L+   +E +    +  +  V+ R+   GGVRIE D+LVT +G +N+T +  +  +IE I+
Sbjct:  329 TRCFPTSGKFTAEHREVYETVLDMQNQAMERIKPGAKWDDLHALTHKVLIKHFLSMGIFKKEFSEDEIFKRRASCAFYPHGLGHMLGLDVHDVGGNPNYDD--PDPMFRYLRIRRPLKENMVITNEPGCYFNQFLIKEFLEKHPERLEVVDMSVLKRYMYVGGVRIEDDILVTKDGYENLTGITSDPDEIEKIV 520          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_PSEA6 (Xaa-Pro dipeptidase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=pepQ PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25
Identity = 58/165 (35.15%), Postives = 98/165 (59.39%), Query Frame = 3
Query:   51 IYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAARLGAVFMPHGLGHFLGIDTHDPGGY---PKGTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + N + +   ++ +++KPGV + D+H  A   + + L +  ++  + D+++A ++ + F PHG+GHFLG+  HD  G+    +GT          LRT R ++ R V T+EPG YFID+LL      E  SKF N +V+  F+ FGG+RIE +++V  + ++NMT
Sbjct:  274 LINGMHQVTLSLADSLKPGVPYSDIHIAAHAQVAQLLHQFDIVNLSPDDILAEQIVSTFFPHGIGHFLGLQVHDVAGHVADDRGTPNPPPAEHPFLRTTRMIEARQVFTIEPGLYFIDSLLADLKSTEK-SKFINWDVVDTFRPFGGIRIEDNIIVHRDKNENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_CITK8 (Xaa-Pro dipeptidase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=pepQ PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.111e-24
Identity = 66/156 (42.31%), Postives = 90/156 (57.69%), Query Frame = 3
Query:   81 AVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ RMV+T+EPG YFI++LL P  E +  SK FN + I   K FGG+RIE +V++  NG +NMT
Sbjct:  283 ALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIVTDISEEAMVENNLTGPFMPHGIGHQLGLQVHDVAGFMQDDTGTHLAAPSKYPYLRCTRVLQPRMVLTIEPGIYFIESLLAPWREGQ-FSKHFNWQKIEALKPFGGIRIEDNVVIHENGVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_SALTY (Xaa-Pro dipeptidase OS=Salmonella typhimurium GN=pepQ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 69/176 (39.20%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ RMV+T+EPG YFI++LL P  E    SK FN + I   K FGG+RIE +V++  NG +NMT
Sbjct:  263 SAKSDNDYAHLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPSKYPYLRCTRVLQPRMVLTIEPGIYFIESLLAPWREG-PFSKHFNWQKIEALKPFGGIRIEDNVVIHENGVENMT 437          
BLAST of CX288542 vs. ExPASy Swiss-Prot
Match: PEPQ_SALTI (Xaa-Pro dipeptidase OS=Salmonella typhi GN=pepQ PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.757e-24
Identity = 69/176 (39.20%), Postives = 96/176 (54.55%), Query Frame = 3
Query:   21 NGKFTSDQSLIYNAVLKAHNAVINAMKPGVCWVDMHKLAEKIILESLKKGGVMVGNVDEMMAAR-LGAVFMPHGLGHFLGIDTHDPGGYPK---GTERSKEPGLKSLRTVRELQERMVITVEPGCYFIDALLVPAMENESTSKFFNHEVIGRFKDFGGVRIESDVLVTANGSKNMT 536
            + K  +D + +   V     A+I  MK GV +VD H    + I + L+K  ++    +E M    L   FMPHG+GH LG+  HD  G+ +   GT  +       LR  R LQ RMV+T+EPG YFI++LL P  E    SK FN + I   K FGG+RIE +V++  NG +NMT
Sbjct:  263 SAKSDNDYAHLVKDVNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPSKYPYLRCTRVLQPRMVLTIEPGIYFIESLLAPWREG-PFSKHFNWQKIEALKPFGGIRIEDNVVIHENGVENMT 437          
The following BLAST results are available for this feature:
BLAST of CX288542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PEPD_HUMAN9.365e-6561.66Xaa-Pro dipeptidase OS=Homo sapiens GN=PEPD PE=1 S... [more]
PEPD_RAT1.766e-6360.10Xaa-Pro dipeptidase OS=Rattus norvegicus GN=Pepd P... [more]
PEPD_MOUSE1.766e-6360.10Xaa-Pro dipeptidase OS=Mus musculus GN=Pepd PE=2 S... [more]
PEPD_PONAB2.307e-6361.14Xaa-Pro dipeptidase OS=Pongo abelii GN=PEPD PE=2 S... [more]
PEPD_DICDI2.556e-5453.65Xaa-Pro dipeptidase OS=Dictyostelium discoideum GN... [more]
YFH6_YEAST4.691e-3238.14Uncharacterized peptidase YFR006W OS=Saccharomyces... [more]
PEPQ_PSEA67.254e-2535.15Xaa-Pro dipeptidase OS=Pseudoalteromonas atlantica... [more]
PEPQ_CITK82.111e-2442.31Xaa-Pro dipeptidase OS=Citrobacter koseri (strain ... [more]
PEPQ_SALTY2.757e-2439.20Xaa-Pro dipeptidase OS=Salmonella typhimurium GN=p... [more]
PEPQ_SALTI2.757e-2439.20Xaa-Pro dipeptidase OS=Salmonella typhi GN=pepQ PE... [more]

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Properties
Property NameValue
Genbank descriptionC02001F01SK IF1 Citrus clementina cDNA clone C02001F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288542 ID=CX288542; Name=CX288542; organism=Citrus clementina; type=EST; length=587bp
TTACTTGCTCATTCCCTGTAAATGGGAAGTTTACTAGTGATCAGAGTCTT
ATATATAATGCCGTCCTCAAAGCTCACAATGCTGTCATAAATGCAATGAA
ACCTGGAGTGTGCTGGGTGGATATGCACAAATTGGCAGAGAAAATTATTC
TGGAGTCGCTGAAGAAGGGTGGTGTCATGGTTGGGAATGTGGATGAGATG
ATGGCTGCACGATTGGGTGCTGTTTTCATGCCTCATGGTCTTGGGCATTT
CTTGGGTATTGACACTCATGATCCTGGCGGCTACCCAAAGGGAACAGAAA
GATCAAAAGAACCTGGCTTAAAATCTCTACGTACAGTTAGAGAACTCCAG
GAGAGAATGGTGATCACAGTGGAGCCTGGATGTTATTTCATTGATGCTCT
GTTGGTCCCGGCCATGGAAAATGAAAGCACTTCCAAGTTTTTTAATCATG
AAGTAATTGGCAGATTCAAAGATTTTGGCGGTGTTCGCATTGAAAGTGAT
GTGCTTGTCACTGCCAATGGAAGCAAGAACATGACTAGCGTACCTCGGGA
AATATCAGATATTGAAGCCATAATGGCAGGCGCTCCA
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