CX288547

Overview
NameCX288547
Unique NameCX288547
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length657
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288547 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 VYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 339
            +YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQTSFYFGY  +F   LGI+CGA+GY+G++ FVR+IY N+K D
Sbjct:  475 IYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587          
BLAST of CX288547 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 8.773e-28
Identity = 59/113 (52.21%), Postives = 69/113 (61.06%), Query Frame = 1
Query:    1 VYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 339
            +YYVYGFM                   YFLLNAE+Y WQWTSF SAASTA             KTKM G FQTSFYFGY  +F   LGI+CGA+GY+G++ FVR+IY N+K D
Sbjct:  477 IYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589          
BLAST of CX288547 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 37/112 (33.04%), Postives = 50/112 (44.64%), Query Frame = 1
Query:    4 YYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 339
            Y +YG +                   YF L+ E++ W W SF +  ST               + M G  Q +FYF Y L+ C    IL G VG+  S +FV+RIYRN+K D
Sbjct:  476 YTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587          
BLAST of CX288547 vs. ExPASy Swiss-Prot
Match: TM9S2_RAT (Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 35/113 (30.97%), Postives = 52/113 (46.02%), Query Frame = 1
Query:    1 VYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 339
            +YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  551 MYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLVYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CX288547 vs. ExPASy Swiss-Prot
Match: TM9S2_PONAB (Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 35/113 (30.97%), Postives = 52/113 (46.02%), Query Frame = 1
Query:    1 VYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 339
            +YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  551 MYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
BLAST of CX288547 vs. ExPASy Swiss-Prot
Match: TM9S2_MOUSE (Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 35/113 (30.97%), Postives = 52/113 (46.02%), Query Frame = 1
Query:    1 VYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 339
            +YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  550 MYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAIHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 662          
BLAST of CX288547 vs. ExPASy Swiss-Prot
Match: TM9S2_HUMAN (Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.963e-11
Identity = 35/113 (30.97%), Postives = 52/113 (46.02%), Query Frame = 1
Query:    1 VYYVYGFMXXXXXXXXXXXXXXXXXXXYFLLNAENYHWQWTSFFSAASTAXXXXXXXXXXXXXKTKMSGFFQTSFYFGYTLMFCLGLGILCGAVGYLGSNLFVRRIYRNIKCD 339
            +YY++GF+                   YF L AE+YHWQW SF ++  TA             K +++G   T  YFGYT++  L   +  G +G+     FV +IY  +K D
Sbjct:  551 MYYMFGFLFLVFIILVITCSEATILLCYFHLCAEDYHWQWRSFLTSGFTAVYFLIYAVHYFFSKLQITGTASTILYFGYTMIMVLIFFLFTGTIGFFACFWFVTKIYSVVKVD 663          
The following BLAST results are available for this feature:
BLAST of CX288547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM9S3_MOUSE8.773e-2852.21Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S3_HUMAN8.773e-2852.21Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]
PHG1B_DICDI6.748e-1233.04Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S2_RAT1.963e-1130.97Transmembrane 9 superfamily member 2 OS=Rattus nor... [more]
TM9S2_PONAB1.963e-1130.97Transmembrane 9 superfamily member 2 OS=Pongo abel... [more]
TM9S2_MOUSE1.963e-1130.97Transmembrane 9 superfamily member 2 OS=Mus muscul... [more]
TM9S2_HUMAN1.963e-1130.97Transmembrane 9 superfamily member 2 OS=Homo sapie... [more]
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Properties
Property NameValue
Genbank descriptionC02001F06SK IF1 Citrus clementina cDNA clone C02001F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288547 ID=CX288547; Name=CX288547; organism=Citrus clementina; type=EST; length=657bp
GTCTACTATGTGTATGGGTTCATGCTGTTGGTTTTTGTGATTCTCATCAT
TGTGACTGTTTGTGTCACAATTGTGGGAACATATTTCCTGCTAAATGCTG
AGAATTATCACTGGCAATGGACATCATTCTTCTCTGCTGCCTCAACGGCT
GTCTATGTGTATTTGTACTCAATATATTACTACTATGTGAAGACTAAGAT
GTCAGGCTTCTTCCAGACTAGCTTCTATTTTGGCTACACTTTGATGTTTT
GTCTTGGTTTAGGAATCCTCTGTGGAGCTGTTGGTTATCTCGGCTCTAAT
TTGTTTGTGAGGAGGATTTATAGAAACATCAAGTGTGACTAGAACGTTAC
CAAGGAAAAACCGACCTGAGTGTGCTTACCTGAGAATTTTTGGCTGAGGC
AATAAAATTTAGAGAGGAAGCCTTGGGTCAGTATATGGGGGACCTTCCAG
TATCTGCAGATGAAAATCACAGGGATAGAGGATATTATGAGGAGCCCTGA
AATTTTTCTAATATTTTCCCCGGCTGGGAGTGAAAGCCTAAGCCTTAAGG
TAGAAGTCAGAGATTGTTTTTATAATATGGGAAGCTTACATAATATTAGG
AACAGCAATCTTTTTATTTTTATTTTTATCTTTATTTTTATTTTTTTCCC
ATTTTCT
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