CX288551

Overview
NameCX288551
Unique NameCX288551
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length643
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig131 contig Ccv1_Contig131:1..643. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 5.843e-45
Identity = 86/134 (64.18%), Postives = 98/134 (73.13%), Query Frame = 1
Query:  244 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI-EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            M+  GGD+ S A+PV Q  H+AWR+YQ+YLDKTTPHA YRWIGTLV+  IYCLRV+Y+Q                      PLVDPE   V+DGP LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFF
Sbjct:    1 MDESGGDSGSVATPVQQRAHEAWRIYQHYLDKTTPHANYRWIGTLVVALIYCLRVYYIQGFYIIAYGLGIYLLNLLIGFLSPLVDPEAGGVSDGPSLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFF 134          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 179.489 bits (454), Expect = 1.302e-44
Identity = 84/133 (63.16%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  244 MEGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            MEG GGD+ S A+PV +  H+AWR+YQYYLDKTTPH+  RWIGTLV   IYCLRV+ +                       PLVDPE+EV+DG  LPT+GSDEFKPFIRRLPEFKFWYSMTKAFCIAF+MTFF
Sbjct:    1 MEGSGGDSGSMATPVQKKVHEAWRVYQYYLDKTTPHSTNRWIGTLVFFLIYCLRVYSIHGFYIISYGLGIYLLNLLIGFLSPLVDPELEVSDGATLPTRGSDEFKPFIRRLPEFKFWYSMTKAFCIAFLMTFF 133          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.267e-23
Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 1
Query:  262 DTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            D++S A  V++  H   +  Q+ LDKT PH +YRWI  L ++ IY +RV++V+                      P  DPE  +  G  LPT+ SDE++PF+RRLPEFKFW S+ +AF I F+MTFF
Sbjct:   29 DSSSPADAVNRLIHAFSQRQQHLLDKTVPHVLYRWIACLCVVLIYIVRVYFVEGFYIITYAIGIYLLNLIIAFLSPQEDPEASLTSGGSLPTRRSDEYRPFVRRLPEFKFWLSIIRAFIIGFMMTFF 155          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 7.685e-21
Identity = 52/134 (38.81%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  247 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            + +G       S V ++     ++YQ +LDK+TPH   RW+ TL +  IY +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF
Sbjct:    5 DSVGDSVHGKPSVVYRFFTRLGQIYQSWLDKSTPHTAVRWVVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFF 138          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_CAEEL (Protein RER1 homolog OS=Caenorhabditis elegans GN=rer-1 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.311e-20
Identity = 49/121 (40.50%), Postives = 66/121 (54.55%), Query Frame = 1
Query:  289 SQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEIEVAD---GPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            S++ H     YQYYLD+ TPH  +RW+  L+ L  +  R+  +Q                      P +DP +E  D   GP+LP+K +DEF+PF+RRLPEFKFW+S  KA  IA   TFF
Sbjct:   13 SRFFHSLEVKYQYYLDRLTPHTAFRWVIALISLVFFASRIILLQGFYIVAYAVGIYYLNLFLLFLTPSIDPALEFEDEDDGPVLPSKTNDEFRPFMRRLPEFKFWHSFMKATLIAITCTFF 133          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  247 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFF 138          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.981e-20
Identity = 49/134 (36.57%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  247 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A + TFF
Sbjct:    5 DSVGDSVHGKPSVVYRFFSRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMICTFF 138          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  247 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFF 138          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.506e-20
Identity = 50/134 (37.31%), Postives = 73/134 (54.48%), Query Frame = 1
Query:  247 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            + +G       S V ++     ++YQ +LDK+TP+   RW+ TL +  +Y +RV+ +Q                      P VDP +  +  DGP LPTK ++EF+PFIRRLPEFKFW++ TK   +A V TFF
Sbjct:    5 DSVGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWVVTLGLSFVYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTKQNEEFRPFIRRLPEFKFWHAATKGILVAMVCTFF 138          
BLAST of CX288551 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.497e-20
Identity = 52/134 (38.81%), Postives = 72/134 (53.73%), Query Frame = 1
Query:  247 EGIGGDTASAASPVSQWGHDAWRLYQYYLDKTTPHAVYRWIGTLVILAIYCLRVFYVQXXXXXXXXXXXXXXXXXXXXXXPLVDPEI--EVADGPLLPTKGSDEFKPFIRRLPEFKFWYSMTKAFCIAFVMTFF 642
            + IG       S V ++     ++YQ +LDK+TP+   RWI TL +  IY +RV+ +Q                      P VDP +  +  DGP LPT+ ++EF+PFIRRLPEFKFW+S TK   +A   TFF
Sbjct:    5 DSIGESVHGKPSVVYRFFTRLGQIYQSWLDKSTPYTAVRWIVTLGLSFIYMIRVYLLQGWYIVTYALGIYHLNLFIAFLSPKVDPSLMEDSDDGPSLPTRQNEEFRPFIRRLPEFKFWHSATKGILVAMACTFF 138          
The following BLAST results are available for this feature:
BLAST of CX288551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RER1A_ARATH5.843e-4564.18Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH1.302e-4463.16Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH1.267e-2341.73Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_BOVIN7.685e-2138.81Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_CAEEL1.311e-2040.50Protein RER1 homolog OS=Caenorhabditis elegans GN=... [more]
RER1_RAT4.981e-2036.57Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE4.981e-2036.57Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_PONAB6.506e-2037.31Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN6.506e-2037.31Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK8.497e-2038.81Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02001F10SK IF1 Citrus clementina cDNA clone C02001F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288551 ID=CX288551; Name=CX288551; organism=Citrus clementina; type=EST; length=643bp
GCAAGATCTGGTCGCATTTCAATTCGCTTCCCTCAAATCAATTTGAGTCC
TTTTACGTGAACATCGAAAGACTCGTTTCAAGATCTGTGGTTGAAGTTCC
CTTTTTATCTTCGAAGTAAATTAGCTGTCAAAGAAAGAATCAAAAGAAAA
ACCCTCGCTTCTGTTTGGTGGGCGAGAAAGCTTGGGAAAATGAAAAGATA
GAATCTTGCATCTTTCTTTTAGGACTTTTCATACTTAGATTGAATGGAAG
GAATTGGAGGCGACACTGCCTCGGCGGCATCCCCTGTATCACAATGGGGA
CATGATGCTTGGAGGCTATATCAGTATTACCTGGACAAGACTACTCCACA
TGCAGTTTATAGGTGGATTGGAACCCTTGTAATTTTGGCAATCTACTGTT
TGCGGGTTTTTTATGTGCAAGGATTCTACATCATATCCTATGGTCTTGGG
ATCTATCTCCTGAATTTGCTTATTGGGTTTTTGTCGCCTCTGGTTGATCC
TGAAATCGAAGTCGCTGATGGGCCTTTGTTGCCGACAAAGGGTTCTGATG
AATTCAAGCCTTTTATTCGCCGACTCCCAGAGTTTAAATTTTGGTACTCC
ATGACCAAGGCTTTCTGCATAGCTTTTGTAATGACATTCTTTT
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