CX288557

Overview
NameCX288557
Unique NameCX288557
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length612
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_ARATH (Coproporphyrinogen-III oxidase, chloroplastic OS=Arabidopsis thaliana GN=CPX PE=1 SV=1)

HSP 1 Score: 375.941 bits (964), Expect = 8.583e-104
Identity = 170/202 (84.16%), Postives = 177/202 (87.62%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLK 611
            VVYGVMPPE         SD+KPGP+PFFAAG+SSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTD TPAYIFEEDVKHFHS QK ACDKFDP+FYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLLSFATECANSV+PAYIPI+EKRKD  FT+QHKAWQQLRRGRYVEFNLVYDRGTTFGLK
Sbjct:  141 VVYGVMPPEAYRAAKGSASDQKPGPVPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRQWWFGGGTDFTPAYIFEEDVKHFHSIQKQACDKFDPSFYPRFKKWCDDYFYIKHRDERRGLGGIFFDDLNDYDQEMLLSFATECANSVVPAYIPIVEKRKDMEFTEQHKAWQQLRRGRYVEFNLVYDRGTTFGLK 342          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_SOYBN (Coproporphyrinogen-III oxidase, chloroplastic OS=Glycine max GN=CPX PE=2 SV=1)

HSP 1 Score: 373.244 bits (957), Expect = 5.563e-103
Identity = 170/202 (84.16%), Postives = 176/202 (87.13%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLK 611
            VVYGVMPP+         +D+KPGP+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTPAYIFEEDVKHFHS QK ACDKF+PTFYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLLSFATECANSVIPAY+PIIEKRKD PF D  KAWQQLRRGRYVEFNLVYDRGTTFGLK
Sbjct:  140 VVYGVMPPDAYRAAKGVPTDQKPGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSIQKQACDKFEPTFYPRFKKWCDDYFYIKHRGERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYLPIIEKRKDLPFNDHQKAWQQLRRGRYVEFNLVYDRGTTFGLK 341          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_TOBAC (Coproporphyrinogen-III oxidase, chloroplastic OS=Nicotiana tabacum GN=CPX PE=2 SV=1)

HSP 1 Score: 364.385 bits (934), Expect = 2.584e-100
Identity = 168/203 (82.76%), Postives = 175/203 (86.21%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDE-KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLK 611
            VVYGVMPPE         +   KPGPIPFFAAG+SSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTD TPAYIFEEDVKHFHS QK+ACDKFD +FYPRFKKWC DYFYIKH          FFDD NDYDQEMLLSF+TECANSVIPAYIPI+EKRKDTPFTD+HKAWQQLRRGRYVEFNLVYDRGTTFGLK
Sbjct:  151 VVYGVMPPEAYRAARPTDNGNVKPGPIPFFAAGVSSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDFTPAYIFEEDVKHFHSVQKAACDKFDASFYPRFKKWCVDYFYIKHRDERRGLGGIFFDDFNDYDQEMLLSFSTECANSVIPAYIPIVEKRKDTPFTDKHKAWQQLRRGRYVEFNLVYDRGTTFGLK 353          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_ORYSJ (Coproporphyrinogen-III oxidase, chloroplastic OS=Oryza sativa subsp. japonica GN=CPX PE=2 SV=2)

HSP 1 Score: 358.992 bits (920), Expect = 1.086e-98
Identity = 165/209 (78.95%), Postives = 175/209 (83.73%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDE-------KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLK 611
            VVYGVMPP+                   K GP+PFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPRQWWFGGGTDLTP+YI EEDVKHFHS QK ACDKFDP+FYPRFKKWCDDYFYIKH          FFDDLNDYDQEMLL+FATECA+SV+PAYIPIIE+RKDTPFT++HKAWQQLRRGRYVEFNLVYDRGTTFGLK
Sbjct:  145 VVYGVMPPDAYRAAKGEAGKNGAAADGPKAGPVPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPSYIIEEDVKHFHSVQKQACDKFDPSFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLNFATECADSVVPAYIPIIERRKDTPFTEEHKAWQQLRRGRYVEFNLVYDRGTTFGLK 353          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_HORVU (Coproporphyrinogen-III oxidase, chloroplastic OS=Hordeum vulgare GN=CPX PE=2 SV=1)

HSP 1 Score: 339.347 bits (869), Expect = 8.903e-93
Identity = 150/181 (82.87%), Postives = 161/181 (88.95%), Query Frame = 3
Query:   69 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLK 611
            K GP+PFF+AGISSVLHPKNPFAPTLHFNYRYFETDAPKD PGAPR WWFGGGTDLTP+Y+ EEDVKHFHS QK  CDKFDP+FYPRFKKWCDDYFYIKH          FFDDLNDYDQ+MLL+FATECA SVIPAYIPIIE+RKDTPF ++ KAWQQ+RRGRYVEFNLVYDRGTTFGLK
Sbjct:  167 KAGPVPFFSAGISSVLHPKNPFAPTLHFNYRYFETDAPKDVPGAPRSWWFGGGTDLTPSYLIEEDVKHFHSVQKQTCDKFDPSFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQDMLLNFATECAGSVIPAYIPIIERRKDTPFNEEQKAWQQVRRGRYVEFNLVYDRGTTFGLK 347          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_DROME (Coproporphyrinogen-III oxidase OS=Drosophila melanogaster GN=Coprox PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 8.683e-64
Identity = 108/202 (53.47%), Postives = 138/202 (68.32%), Query Frame = 3
Query:    6 VVYGVMPPEXXXXXXXXXSDEKPGP-IPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGL 608
            VV G +PP           + K G  +PFFA+G+S+V+HP+NP  PT+HFNYRYFE +  K      +QWWFGGGTDLTP Y+ E+D  HFH T KSACD+ DPT+YPRFKKWCDDYF IKH          FFDD++  +QE   +F + CA +VIP+Y+P++ K K+  + +  + WQ LRRGRYVEFNL+YDRGT FGL
Sbjct:  147 VVTGSLPPAAVQQMRARGKNLKEGASLPFFASGVSAVIHPRNPHVPTIHFNYRYFEVETAK----GEKQWWFGGGTDLTPYYLCEKDASHFHQTLKSACDEHDPTYYPRFKKWCDDYFRIKHRNESRGIGGIFFDDIDSPNQEAAFNFVSSCARAVIPSYVPLVRKHKNREYGNNERQWQLLRRGRYVEFNLIYDRGTKFGL 344          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_HUMAN (Coproporphyrinogen-III oxidase, mitochondrial OS=Homo sapiens GN=CPOX PE=1 SV=3)

HSP 1 Score: 232.646 bits (592), Expect = 1.174e-60
Identity = 103/180 (57.22%), Postives = 124/180 (68.89%), Query Frame = 3
Query:   69 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGL 608
            K G +PF A G+SSV+HPKNP APT+HFNYRYFE +         +QWWFGGG DLTP Y+ +ED  HFH T K ACD+  P  YP+FKKWCDDYF+I H          FFDDL+   +E +  F   CA +V+P+YIP+++K  D  FT Q K WQQLRRGRYVEFNL+YDRGT FGL
Sbjct:  232 KDGKLPFCAMGVSSVIHPKNPHAPTIHFNYRYFEVEEADGN----KQWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDLYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEVFRFVQSCARAVVPSYIPLVKKHCDDSFTPQEKLWQQLRRGRYVEFNLLYDRGTKFGL 407          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_RAT (Coproporphyrinogen-III oxidase, mitochondrial OS=Rattus norvegicus GN=Cpox PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 103/181 (56.91%), Postives = 122/181 (67.40%), Query Frame = 3
Query:   66 EKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGL 608
            +K G +PF A GISSV+HPKNP+APT+HFNYRYFE +           WWFGGG DLTP Y+  ED  HFH T K ACD+  P  YP+FKKWCDDYF+I H          FFDDL+   +E    F   CA +V+P+Y+PI++K  D  +T Q K WQQLRRGRYVEFNLVYDRGT FGL
Sbjct:  220 KKDGKLPFTAMGISSVIHPKNPYAPTMHFNYRYFEVEEAD----GKMHWWFGGGCDLTPTYLNREDAVHFHRTLKEACDQHGPDIYPKFKKWCDDYFFIAHRGERRGIGGIFFDDLDSPSKEEAFRFVKTCAEAVVPSYVPIVKKHCDDSYTPQDKLWQQLRRGRYVEFNLVYDRGTKFGL 396          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_SCHPO (Probable coproporphyrinogen-III oxidase OS=Schizosaccharomyces pombe GN=hem13 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.447e-58
Identity = 101/183 (55.19%), Postives = 126/183 (68.85%), Query Frame = 3
Query:   63 DEKPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLK 611
            D     +PFFAAGIS V+HP+NP APT H NYRYFE           + WWFGGG DLTP+ +FEED KHFH   K ACD+ DPTFYPRFKKW D+YF IKH          FFDDL++ D + L +F  +CA++ +PAY+PI+EKRK+  FT+  K +Q +RRG Y EFN++YDRGT FGL+
Sbjct:   90 DRTAKELPFFAAGISMVIHPRNPMAPTTHLNYRYFELV----NSDGKKIWWFGGGADLTPSILFEEDGKHFHKLHKEACDRHDPTFYPRFKKWADEYFLIKHRKETRGIGGIFFDDLSEKDPQELFAFVKDCAHTFLPAYVPIMEKRKNMEFTEDDKEFQLIRRGYYAEFNVMYDRGTWFGLQ 268          
BLAST of CX288557 vs. ExPASy Swiss-Prot
Match: HEM6_MOUSE (Coproporphyrinogen-III oxidase, mitochondrial OS=Mus musculus GN=Cpox PE=1 SV=2)

HSP 1 Score: 224.557 bits (571), Expect = 3.196e-58
Identity = 99/180 (55.00%), Postives = 121/180 (67.22%), Query Frame = 3
Query:   69 KPGPIPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSACDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIPAYIPIIEKRKDTPFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGL 608
            K   +PF A G+SSV+HPKNP+APT+HFNYRYFE +           WWFGGG DLTP Y+ +ED  HFH T K ACD+  P  YP+FKKWCDDYF+I H          FFDDL+   +E    F   CA +V+P+Y+PI++K  D  +T + K WQQLRRGRYVEFNL+YDRGT FGL
Sbjct:  221 KDSKLPFTAMGVSSVIHPKNPYAPTMHFNYRYFEVEEADGNT----HWWFGGGCDLTPTYLNQEDAVHFHRTLKEACDQHGPDIYPKFKKWCDDYFFIVHRGERRGIGGIFFDDLDSPSKEEAFRFVKTCAEAVVPSYVPIVKKHCDDSYTPRDKLWQQLRRGRYVEFNLLYDRGTKFGL 396          
The following BLAST results are available for this feature:
BLAST of CX288557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_ARATH8.583e-10484.16Coproporphyrinogen-III oxidase, chloroplastic OS=A... [more]
HEM6_SOYBN5.563e-10384.16Coproporphyrinogen-III oxidase, chloroplastic OS=G... [more]
HEM6_TOBAC2.584e-10082.76Coproporphyrinogen-III oxidase, chloroplastic OS=N... [more]
HEM6_ORYSJ1.086e-9878.95Coproporphyrinogen-III oxidase, chloroplastic OS=O... [more]
HEM6_HORVU8.903e-9382.87Coproporphyrinogen-III oxidase, chloroplastic OS=H... [more]
HEM6_DROME8.683e-6453.47Coproporphyrinogen-III oxidase OS=Drosophila melan... [more]
HEM6_HUMAN1.174e-6057.22Coproporphyrinogen-III oxidase, mitochondrial OS=H... [more]
HEM6_RAT7.607e-6056.91Coproporphyrinogen-III oxidase, mitochondrial OS=R... [more]
HEM6_SCHPO2.447e-5855.19Probable coproporphyrinogen-III oxidase OS=Schizos... [more]
HEM6_MOUSE3.196e-5855.00Coproporphyrinogen-III oxidase, mitochondrial OS=M... [more]

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Properties
Property NameValue
Genbank descriptionC02001G04SK IF1 Citrus clementina cDNA clone C02001G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288557 ID=CX288557; Name=CX288557; organism=Citrus clementina; type=EST; length=612bp
CGAGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCTTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCTGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCCTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGACGTTACGTAGAATTCAACTTGGTTTATGATCGAGGTACAACAT
TTGGGCTGAAGA
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