CX288558

Overview
NameCX288558
Unique NameCX288558
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length602
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11470 contig Ccv1_Contig11470:404..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP22_ARATH (Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2 PE=1 SV=2)

HSP 1 Score: 305.834 bits (782), Expect = 1.055e-82
Identity = 145/167 (86.83%), Postives = 155/167 (92.81%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSSNI 502
            SL+RAV+YMVAQCLGAICG G VKAFQ SYY RYGGGAN LADGY+TGTGL AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIY K K WDD WIFWVGPFIGAAIAAFYHQF+LRAS SK+LGSF+S++N+
Sbjct:  119 SLIRAVLYMVAQCLGAICGVGFVKAFQSSYYDRYGGGANSLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAANV 285          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP24_ARATH (Probable aquaporin PIP2-4 OS=Arabidopsis thaliana GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 5.237e-82
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKS 490
            SLVR V+Y+VAQCLGAICGCG VKAFQ SYYTRYGGGANELADGY+ GTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIY  +KAWDDQWIFWVGP IGAA AAFYHQFILRA+A KALGSF S
Sbjct:  121 SLVRTVLYIVAQCLGAICGCGFVKAFQSSYYTRYGGGANELADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNNEKAWDDQWIFWVGPMIGAAAAAFYHQFILRAAAIKALGSFGS 283          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP21_ARATH (Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1 PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.167e-81
Identity = 143/167 (85.63%), Postives = 155/167 (92.81%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSSNI 502
            SL RA++Y++AQCLGAICG G VKAFQ SYYTRYGGGAN LADGYSTGTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVIY K K WDD WIFWVGPFIGAAIAAFYHQF+LRAS SK+LGSF+S++N+
Sbjct:  121 SLPRALLYIIAQCLGAICGVGFVKAFQSSYYTRYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIYNKSKPWDDHWIFWVGPFIGAAIAAFYHQFVLRASGSKSLGSFRSAANV 287          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP23_ARATH (Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3 PE=1 SV=1)

HSP 1 Score: 298.13 bits (762), Expect = 2.200e-80
Identity = 141/167 (84.43%), Postives = 153/167 (91.62%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSSNI 502
            SL+RAV+YMVAQCLGAICG G VKAFQ S+Y  YGGGAN LADGY+TGTGL AEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARS GAAVI+ K K WDD WIFWVGPFIGA IAAFYHQF+LRAS SK+LGSF+S++N+
Sbjct:  119 SLIRAVLYMVAQCLGAICGVGFVKAFQSSHYVNYGGGANFLADGYNTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKSKPWDDHWIFWVGPFIGATIAAFYHQFVLRASGSKSLGSFRSAANV 285          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP21_MAIZE (Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2)

HSP 1 Score: 297.36 bits (760), Expect = 3.753e-80
Identity = 143/165 (86.67%), Postives = 153/165 (92.73%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 496
            SLVRA++Y+VAQCLGAICG GLVKAFQ +Y+ RYGGGAN LA GYS GTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIY KDK WDD WIFWVGP +GAAIAAFYHQ+ILRA A KALGSF+S++
Sbjct:  126 SLVRALLYIVAQCLGAICGVGLVKAFQSAYFDRYGGGANSLASGYSRGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNKDKPWDDHWIFWVGPLVGAAIAAFYHQYILRAGAIKALGSFRSNA 290          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP22_ORYSJ (Probable aquaporin PIP2-2 OS=Oryza sativa subsp. japonica GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 8.361e-80
Identity = 141/165 (85.45%), Postives = 155/165 (93.94%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 496
            SL+RAV+Y++AQCLGAICG GLVK FQ SYY RYGGGANEL+DGYS GTGLGAEIIGTFVLVYTVFSATDPKRNARDSH+PVLAPLPIGFAVFMVHLATIP+TGTGINPARSLG AVIY KDKAWDDQWIFWVGP IGAAIAA YHQ++LRASA+K LGS++S++
Sbjct:  125 SLIRAVLYIIAQCLGAICGVGLVKGFQSSYYARYGGGANELSDGYSKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHIPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGTAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASAAK-LGSYRSNA 288          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP22_MAIZE (Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1)

HSP 1 Score: 295.434 bits (755), Expect = 1.426e-79
Identity = 140/165 (84.85%), Postives = 152/165 (92.12%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 496
            SLVRA++YMVAQCLGA+CG GLVKAFQ +Y+ RYGGGAN LA GYS G GLGAEI+GTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAV+Y KDK WDD WIFWVGP +GAAIAAFYHQ+ILRA A KALGSF+S++
Sbjct:  128 SLVRALLYMVAQCLGAVCGVGLVKAFQSAYFDRYGGGANSLASGYSRGAGLGAEIVGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVVYNKDKPWDDHWIFWVGPLLGAAIAAFYHQYILRAGAIKALGSFRSNA 292          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP25_ARATH (Probable aquaporin PIP2-5 OS=Arabidopsis thaliana GN=PIP2-5 PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 4.150e-79
Identity = 140/167 (83.83%), Postives = 153/167 (91.62%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSSNI 502
            +LVRAVMYMVAQCLGAICG  LVKAFQ +Y+TRYGGGAN L+DGYS GTG+ AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVF+VHLATIP+TGTGINPARSLGAA+IY KDKAWD  WIFWVGPF GAAIAAFYHQF+LRA A KALGSF+S  ++
Sbjct:  120 TLVRAVMYMVAQCLGAICGVALVKAFQSAYFTRYGGGANGLSDGYSIGTGVAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFIVHLATIPITGTGINPARSLGAAIIYNKDKAWDHHWIFWVGPFAGAAIAAFYHQFVLRAGAIKALGSFRSQPHV 286          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP24_MAIZE (Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.577e-78
Identity = 140/165 (84.85%), Postives = 155/165 (93.94%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 496
            SLVRA++Y++AQCLGAICG GLVK FQ +YY RYGGGANEL+DGYS GTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAVIY KDKAWDDQWIFWVGP IGAAIAA YHQ++LRASA+K LGS++S++
Sbjct:  125 SLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 288          
BLAST of CX288558 vs. ExPASy Swiss-Prot
Match: PIP23_MAIZE (Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 1.577e-78
Identity = 140/165 (84.85%), Postives = 155/165 (93.94%), Query Frame = 2
Query:    2 SLVRAVMYMVAQCLGAICGCGLVKAFQKSYYTRYGGGANELADGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYKKDKAWDDQWIFWVGPFIGAAIAAFYHQFILRASASKALGSFKSSS 496
            SLVRA++Y++AQCLGAICG GLVK FQ +YY RYGGGANEL+DGYS GTGL AEIIGTFVLVYTVFSATDPKR+ARDSHVPVLAPLPIGFAVFMVHLATIP+TGTGINPARSLGAAVIY KDKAWDDQWIFWVGP IGAAIAA YHQ++LRASA+K LGS++S++
Sbjct:  126 SLVRALLYIIAQCLGAICGVGLVKGFQSAYYVRYGGGANELSDGYSKGTGLAAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIYNKDKAWDDQWIFWVGPLIGAAIAAAYHQYVLRASATK-LGSYRSNA 289          
The following BLAST results are available for this feature:
BLAST of CX288558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 149
Match NameE-valueIdentityDescription
PIP22_ARATH1.055e-8286.83Aquaporin PIP2-2 OS=Arabidopsis thaliana GN=PIP2-2... [more]
PIP24_ARATH5.237e-8289.57Probable aquaporin PIP2-4 OS=Arabidopsis thaliana ... [more]
PIP21_ARATH1.167e-8185.63Aquaporin PIP2-1 OS=Arabidopsis thaliana GN=PIP2-1... [more]
PIP23_ARATH2.200e-8084.43Aquaporin PIP2-3 OS=Arabidopsis thaliana GN=PIP2-3... [more]
PIP21_MAIZE3.753e-8086.67Aquaporin PIP2-1 OS=Zea mays GN=PIP2-1 PE=1 SV=2[more]
PIP22_ORYSJ8.361e-8085.45Probable aquaporin PIP2-2 OS=Oryza sativa subsp. j... [more]
PIP22_MAIZE1.426e-7984.85Aquaporin PIP2-2 OS=Zea mays GN=PIP2-2 PE=2 SV=1[more]
PIP25_ARATH4.150e-7983.83Probable aquaporin PIP2-5 OS=Arabidopsis thaliana ... [more]
PIP24_MAIZE1.577e-7884.85Aquaporin PIP2-4 OS=Zea mays GN=PIP2-4 PE=1 SV=1[more]
PIP23_MAIZE1.577e-7884.85Aquaporin PIP2-3 OS=Zea mays GN=PIP2-3 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC02001G05SK IF1 Citrus clementina cDNA clone C02001G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288558 ID=CX288558; Name=CX288558; organism=Citrus clementina; type=EST; length=602bp
GTCACTGGTGCGAGCCGTAATGTACATGGTGGCTCAGTGTTTGGGAGCCA
TATGTGGCTGCGGGCTCGTTAAGGCTTTCCAGAAGTCTTACTACACAAGA
TACGGCGGTGGAGCCAATGAGCTCGCTGATGGGTACAGCACTGGCACTGG
ATTGGGTGCTGAGATCATTGGTACCTTTGTTCTTGTCTACACTGTTTTCT
CCGCCACCGATCCCAAGAGAAATGCTAGGGACTCCCATGTTCCTGTCTTG
GCACCATTGCCAATTGGATTTGCTGTGTTCATGGTTCACTTGGCGACAAT
CCCAGTCACTGGAACTGGCATCAACCCCGCTAGAAGTTTGGGAGCTGCAG
TGATTTACAAGAAGGACAAGGCTTGGGATGATCAATGGATCTTCTGGGTT
GGCCCCTTCATTGGTGCTGCAATTGCTGCATTTTACCACCAATTCATCCT
CAGAGCATCTGCTTCTAAAGCTCTTGGATCCTTCAAAAGCTCCTCCAACA
TTTAATTAACTTTTAAAATAATTACTGGAGGATTAATCAATGGCTGTCAA
GCGCCTTCGCGACTATGGAATTTGTACATTATTTTATTTGCATCAGTATT
TA
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