CX288600

Overview
NameCX288600
Unique NameCX288600
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length205
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4950 contig Ccv1_Contig4950:125..329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX288600 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.590e-13
Identity = 39/73 (53.42%), Postives = 52/73 (71.23%), Query Frame = 2 
Query:    2 KAAPRNQLSRNLIKSPS---SLGSVKGISKTFGLKCSPNFQASM--AVYKIKLIGPNGEEHEFEAQEDQYILD 205
            KA  R+Q +  LI + S   S+GS K +S++FGLKCS N   +   AVYK+KL+GP+G+E EFE Q+DQYILD
Sbjct:   13 KAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAVYKVKLLGPDGQEDEFEVQDDQYILD 85
[Close]
BLAST of CX288600 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.573e-11
Identity = 34/63 (53.97%), Postives = 42/63 (66.67%), Query Frame = 2 
Query:   20 QLSRNLIKSPSSLGSVKGISKTFGLKCSPNFQAS-MAVYKIKLIGPNGEEHEFEAQEDQYILD 205
            Q S+  +KSPSSL     ++K   LK S     S MAVYK+KL+GP GEEHEF+A +D YILD
Sbjct:   20 QASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAYILD 82
The following BLAST results are available for this feature:
BLAST of CX288600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
FER3_ARATH3.590e-1353.42Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE2.573e-1153.97Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
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Properties
Property NameValue
Genbank descriptionC02002C03SK IF1 Citrus clementina cDNA clone C02002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288600 ID=CX288600; Name=CX288600; organism=Citrus clementina; type=EST; length=205bp
TAAAGCTGCACCCAGAAATCAACTATCAAGGAACTTAATCAAGAGCCCAT
CCTCACTTGGGTCTGTTAAGGGCATCTCCAAGACCTTTGGCCTGAAATGC
TCTCCCAATTTCCAAGCATCAATGGCTGTCTACAAGATTAAGCTGATTGG
ACCTAACGGTGAAGAGCATGAGTTTGAGGCCCAGGAAGACCAGTACATCC
TCGAT
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