CX288625

Overview
NameCX288625
Unique NameCX288625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length401
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX288625 vs. ExPASy Swiss-Prot
Match: VATG_CITLI (V-type proton ATPase subunit G OS=Citrus limon GN=VATG PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.090e-30
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = -2
Query:  194 AEREIAEHRAQVEREFQRKLSESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 400
            AEREIAE+RAQVEREFQRKL+ES GDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQM LKHVTTVKN
Sbjct:   42 AEREIAEYRAQVEREFQRKLAESVGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMFLKHVTTVKN 110          
BLAST of CX288625 vs. ExPASy Swiss-Prot
Match: VATG1_TOBAC (V-type proton ATPase subunit G 1 OS=Nicotiana tabacum GN=VATG1 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.166e-22
Identity = 51/69 (73.91%), Postives = 59/69 (85.51%), Query Frame = -2
Query:  194 AEREIAEHRAQVEREFQRKLSESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 400
            AE+EIAE RA +E EFQRKL ++SGDSGANVKRLEQET+ KI HLK  AE++  DVVQMLL+HVTTVKN
Sbjct:   42 AEKEIAEFRAYMEAEFQRKLEQTSGDSGANVKRLEQETDAKIEHLKTEAERVSPDVVQMLLRHVTTVKN 110          
BLAST of CX288625 vs. ExPASy Swiss-Prot
Match: VAGT1_ARATH (V-type proton ATPase subunit G1 OS=Arabidopsis thaliana GN=VHA-G1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.068e-21
Identity = 50/69 (72.46%), Postives = 59/69 (85.51%), Query Frame = -2
Query:  194 AEREIAEHRAQVEREFQRKLSESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 400
            AE+EIAE++AQ E++FQRKL E+SGDSGANVKRLEQET+ KI  LK  A +I  DVV+MLLKHVTTVKN
Sbjct:   42 AEKEIAEYKAQTEQDFQRKLEETSGDSGANVKRLEQETDTKIEQLKNEASRISKDVVEMLLKHVTTVKN 110          
BLAST of CX288625 vs. ExPASy Swiss-Prot
Match: VATG2_TOBAC (V-type proton ATPase subunit G 2 OS=Nicotiana tabacum GN=VATG2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.899e-20
Identity = 49/69 (71.01%), Postives = 56/69 (81.16%), Query Frame = -2
Query:  194 AEREIAEHRAQVEREFQRKLSESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 400
            AE+EIAE RA +E EFQR + ++SGDSGANVKRLEQET  KI HLK  AE I +DVVQMLL+ VTTVKN
Sbjct:   43 AEKEIAEFRAYMEAEFQRNVEQTSGDSGANVKRLEQETFAKIQHLKTEAESISHDVVQMLLRQVTTVKN 111          
BLAST of CX288625 vs. ExPASy Swiss-Prot
Match: VATG2_ARATH (V-type proton ATPase subunit G2 OS=Arabidopsis thaliana GN=VHA-G2 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.062e-17
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = -2
Query:  194 AEREIAEHRAQVEREFQRKLSESSGDSGANVKRLEQETEVKIHHLKAGAEKIQYDVVQMLLKHVTTVKN 400
            AE E+AEH+   E+ FQRKL  +SGDSGANVKRLEQET+ KI  LK  A +I  DVV MLLK+VTTV N
Sbjct:   38 AETEVAEHKTSTEQGFQRKLEATSGDSGANVKRLEQETDAKIEQLKNEATRISKDVVDMLLKNVTTVNN 106          
The following BLAST results are available for this feature:
BLAST of CX288625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
VATG_CITLI7.090e-3094.20V-type proton ATPase subunit G OS=Citrus limon GN=... [more]
VATG1_TOBAC4.166e-2273.91V-type proton ATPase subunit G 1 OS=Nicotiana taba... [more]
VAGT1_ARATH2.068e-2172.46V-type proton ATPase subunit G1 OS=Arabidopsis tha... [more]
VATG2_TOBAC3.899e-2071.01V-type proton ATPase subunit G 2 OS=Nicotiana taba... [more]
VATG2_ARATH1.062e-1765.22V-type proton ATPase subunit G2 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionC02002E09SK IF1 Citrus clementina cDNA clone C02002E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288625 ID=CX288625; Name=CX288625; organism=Citrus clementina; type=EST; length=401bp
AATTTTGATACGTTTATGGTTATTTATTCTAACAATGAGCAGAATTTGAA
GTACAACGAACTCATTTCCAACTTTGATAAATTACAATCCAAAATAAACC
AAACGATGAAAAAACCAATGCATGGATCCTAATTACAACTCACATGAAGT
CTAGGATTCACAACGAACCAGGAAAAGATAACATCAGAGCTTAATTCTTC
ACAGTTGTAACATGCTTCAGGAGCATTTGGACAACATCATATTGAATTTT
CTCAGCCCCAGCCTTAAGATGATGAATTTTTACCTCTGTTTCTTGTTCAA
GCCTCTTCACATTCGCACCTGAATCTCCACTACTCTCTGAAAGTTTCCTC
TGGAACTCACGCTCCACCTGAGCTCGATGTTCAGCAATCTCCCTTTCAGC
C
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