CX288632

Overview
NameCX288632
Unique NameCX288632
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length535
Libraries
Library NameType
IF1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig6138 contig Ccv1_Contig6138:153..687. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX288632 vs. ExPASy Swiss-Prot
Match: FB84_ARATH (F-box protein At1g70590 OS=Arabidopsis thaliana GN=At1g70590 PE=2 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 5.766e-52
Identity = 107/183 (58.47%), Postives = 132/183 (72.13%), Query Frame = 1 
Query:    1 RTWPDRSTGSRFTALQFPITEKDNRRPELTASXXXXXXXXXXXFSCSRSIKS----TEGHDFASLPFDVLNKIAASFTLPQLRAASLVCKSWNDALRPLREAMVLLRWGKRFKHGRG-VRKNLDKALDSFLKGAARGSTLAMVDAGLMYWEMDKKEAAISLYRQAAVLGDPAGQFNLGISYLQ 534
            RTWP RS GSRF++L F      ++R  +++             S S S  S     E  DF+ LP+D+L KIAA F+ P L+AASLVCKSW DAL+PLRE+M+L+RWGK++KHGRG VR NLDKALDSFLKGA RGSTLAMVDAGL+YWE  +KE A++LYR+A+ LGD  GQ NLGI+YLQ
Sbjct:    4 RTWPCRSEGSRFSSLSFLKPHDKDKRSRISSINKATAKSTTSSRSSSSSSSSRPPSNEFGDFSMLPYDILMKIAAPFSHPNLQAASLVCKSWRDALKPLRESMLLIRWGKKYKHGRGGVRANLDKALDSFLKGAMRGSTLAMVDAGLVYWERGEKEKAVNLYRRASELGDAVGQCNLGIAYLQ 186
The following BLAST results are available for this feature:
BLAST of CX288632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
FB84_ARATH5.766e-5258.47F-box protein At1g70590 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionC02002F04SK IF1 Citrus clementina cDNA clone C02002F04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX288632 ID=CX288632; Name=CX288632; organism=Citrus clementina; type=EST; length=535bp
AGAACATGGCCGGATCGATCGACCGGCTCTCGGTTCACAGCTCTTCAATT
CCCGATAACCGAGAAGGACAACCGCCGGCCAGAACTCACCGCCAGTGCAC
GGAAGGCTAGAATCAAACGGCGCANCCGCTTCAGCTGCTCACGATCAATA
AAATCAACGGAGGGTCATGATTTCGCGAGCCTACCGTTCGATGTCTTGAA
CAAAATCGCAGCGTCATTCACGCTGCCTCAACTGAGAGCGGCGTCGCTGG
TGTGCAAGTCATGGAACGACGCGCTTCGGCCGTTGAGAGAGGCGATGGTG
TTACTAAGATGGGGGAAACGATTCAAGCACGGCCGAGGCGTCCGCAAGAA
CTTGGATAAGGCTCTCGACTCGTTCTTGAAAGGCGCGGCTCGCGGCTCCA
CGCTTGCTATGGTTGACGCCGGACTGATGTATTGGGAGATGGACAAAAAG
GAGGCGGCTATTAGCTTGTATCGGCAAGCCGCTGTGCTTGGAGATCCAGC
TGGTCAGTTCAATTTGGGAATTTCTTATTTGCAAG
back to top